CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04424
KRH28353
KRH58109
KRH77129

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60580.1	KRH04424	AT4G37650.1	21245844
AT3G60580.1	KRH28353	AT4G37650.1	21245844
AT3G60580.1	KRH58109	AT4G37650.1	21245844
AT3G60580.1	KRH77129	AT4G37650.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g02720.t01	Wine grape	nucleus	55.78	60.45
KRH76140	Soybean	nucleus	56.56	60.27
KRH65408	Soybean	nucleus	56.3	56.44
PGSC0003DMT400053945	Potato	cytosol	20.57	52.29
KRH57408	Soybean	nucleus	34.45	50.57
Bra040325.1-P	Field mustard	nucleus	36.25	50.18
CDY37027	Canola	nucleus	36.25	50.18
KRH28087	Soybean	nucleus	37.02	50.0
Solyc01g090840.2.1	Tomato	nucleus	41.39	49.85
KRH04135	Soybean	nucleus	33.68	49.81
KRH77360	Soybean	nucleus	37.53	48.99
AT3G60580.1	Thale cress	nucleus	36.25	48.96
CDY27394	Canola	nucleus	35.73	48.77
CDY41155	Canola	nucleus	30.85	48.39
PGSC0003DMT400066939	Potato	nucleus	40.87	48.18
CDX83402	Canola	nucleus	36.25	47.32
CDX71799	Canola	nucleus	31.62	47.31
CDX95629	Canola	nucleus	32.9	46.72
CDX89061	Canola	nucleus	31.11	46.01
CDY71582	Canola	nucleus	32.13	45.96
Bra003422.1-P	Field mustard	nucleus	34.7	45.45
CDX67836	Canola	nucleus	34.45	45.42
Bra007545.1-P	Field mustard	nucleus	34.19	44.78
AT2G45120.1	Thale cress	nucleus	35.99	44.59
Bra000372.1-P	Field mustard	mitochondrion, nucleus	35.48	44.52
CDY48363	Canola	nucleus	30.85	41.81
Bra014483.1-P	Field mustard	nucleus	26.99	41.18
KRH39952	Soybean	nucleus	26.99	34.31
GSMUA_Achr4P03310_001	Banana	nucleus	22.11	33.33
GSMUA_Achr6P34890_001	Banana	nucleus, plastid	23.14	33.21
KRH15443	Soybean	nucleus	17.99	30.04
GSMUA_Achr4P32760_001	Banana	nucleus	24.94	29.66
GSMUA_Achr9P09370_001	Banana	nucleus	20.82	29.35
KRH52082	Soybean	nucleus	17.22	28.76
KRH05601	Soybean	nucleus	17.48	28.33
KRH61394	Soybean	nucleus	16.71	27.9
KRG91102	Soybean	nucleus	16.71	25.0
KRH35675	Soybean	nucleus	16.2	24.51

Protein Annotations

EntrezGene:100799313	MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A0A0R0LEU2	EMBL:ACUP02000325	EnsemblPlantsGene:GLYMA_01G079900
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:IPR013087	EnsemblPlants:KRH75355	ProteinID:KRH75355	ProteinID:KRH75355.1	PFAM:PF13912
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF304	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0002337910	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:21711344..21712781

Molecular Weight (calculated)

43824.9 Da

IEP (calculated)

4.938

GRAVY (calculated)

-1.054

Length

389 amino acids

Sequence
(BLAST)

001: MDRHKCKLCF RSFANGRALG GHMRSHMMNL PISKPEELAS SRTIQLSFEA ESASSSSSSS SDEEDEDDEK TLCYDLRENP KRSIRLVDPE FSFATAADTG
101: SVILHDRESE SESSKNNPTR RISKRPWNNN DNYYNNDTTN SSVRKKGLGF EHESTKKCKT ESWVDHDPAS SVSDATTEED VAFCLMMLSR DKWKRQRDQD
201: QPCRFAEREN QYEVEDQEEE DDEEDEEDED DEEAFEESEE SQETSKQCKN RVRGRYKCDT CNKVFRSYQA LGGHRASHKK IKVNGGGREQ ELEHNKKKSG
301: TCVVVEKKTH ECPVCFRVFA SGQALGGHKR THVTGSAATA AAIATTLPSS SAKFGNSFID LNLPAPIDED DASQIENSAV SDAEFVKIH

Best Arabidopsis Sequence Match ( AT3G60580.1 )
(BLAST)

001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ

Arabidopsis Description

ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.