Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | KRH04424 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | KRH28353 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | KRH58109 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | KRH77129 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76140 | Soybean | nucleus | 80.93 | 86.03 |
| KRH75355 | Soybean | nucleus | 56.44 | 56.3 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 50.52 | 54.6 |
| CDY41155 | Canola | nucleus | 32.99 | 51.61 |
| KRH57408 | Soybean | nucleus | 34.79 | 50.94 |
| PGSC0003DMT400066939 | Potato | nucleus | 43.3 | 50.91 |
| Bra040325.1-P | Field mustard | nucleus | 36.86 | 50.89 |
| CDY37027 | Canola | nucleus | 36.86 | 50.89 |
| CDY27394 | Canola | nucleus | 37.11 | 50.53 |
| Solyc01g090840.2.1 | Tomato | nucleus | 42.01 | 50.46 |
| AT3G60580.1 | Thale cress | nucleus | 37.37 | 50.35 |
| PGSC0003DMT400053945 | Potato | cytosol | 19.85 | 50.33 |
| KRH28087 | Soybean | nucleus | 37.11 | 50.0 |
| KRH04135 | Soybean | nucleus | 33.51 | 49.43 |
| CDX71799 | Canola | nucleus | 32.73 | 48.85 |
| KRH77360 | Soybean | nucleus | 37.37 | 48.66 |
| Bra007545.1-P | Field mustard | nucleus | 36.6 | 47.81 |
| CDX95629 | Canola | nucleus | 33.76 | 47.81 |
| CDY71582 | Canola | nucleus | 33.51 | 47.79 |
| CDX89061 | Canola | nucleus | 31.96 | 47.15 |
| Bra003422.1-P | Field mustard | nucleus | 35.82 | 46.8 |
| CDX67836 | Canola | nucleus | 35.57 | 46.78 |
| CDX83402 | Canola | nucleus | 35.31 | 45.97 |
| Bra000372.1-P | Field mustard | mitochondrion, nucleus | 35.31 | 44.19 |
| AT2G45120.1 | Thale cress | nucleus | 35.31 | 43.63 |
| CDY48363 | Canola | nucleus | 31.96 | 43.21 |
| Bra014483.1-P | Field mustard | nucleus | 27.84 | 42.35 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 22.68 | 34.11 |
| KRH39952 | Soybean | nucleus | 26.8 | 33.99 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 22.42 | 32.1 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 26.29 | 31.19 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 21.39 | 30.07 |
| KRH52082 | Soybean | nucleus | 17.27 | 28.76 |
| KRH05601 | Soybean | nucleus | 17.78 | 28.75 |
| KRH15443 | Soybean | nucleus | 16.75 | 27.9 |
| KRH61394 | Soybean | nucleus | 16.75 | 27.9 |
| KRG91102 | Soybean | nucleus | 17.78 | 26.54 |
| KRH35675 | Soybean | nucleus | 17.01 | 25.68 |
Protein Annotations
| EntrezGene:100780611 | MapMan:15.5.15 | EMBL:ACUP02001342 | EMBL:BT096580 | UniProt:C6TG36 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_03G033600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 | EnsemblPlants:KRH65408 | ProteinID:KRH65408 | ProteinID:KRH65408.1 |
| PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0001B168F1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr3:-:3885839..3887777
Molecular Weight (calculated)
43355.0 Da
IEP (calculated)
4.811
GRAVY (calculated)
-0.836
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKHKCKLCL RSFANGRALG GHMRSHMMNL PVPPKQSELV PIQLSFEAES SPSQSSSSFY GLRENPKKNF RFADPEFSFA AAETSSVILQ DRESETESSR
101: NPTRRRSKRA WQQLGGDSGG GGVSDESEKK MMKVFDAVNK NNNESASSVS DTTTEEAVAF CLMMLSRDKW KENNKLLYDN KVEIAEYNDD YDDEEDEDEE
201: EEEDEEIYES EEELKSVKKS NKVRGRYKCE TCEKVFRSYQ ALGGHRASHK KIKLNNCENK NKNNNNNNDD EAEQLEVQHV VVVEKKIHEC PVCFRVFASG
301: QALGGHKRTH VIGSSTAAAT TTATAITTVS VRNSVATVSV RTTSTARVVG DSLIDLNLPA PMDDDEEEEG NVSQFEDSAV SDAEFVKL
101: NPTRRRSKRA WQQLGGDSGG GGVSDESEKK MMKVFDAVNK NNNESASSVS DTTTEEAVAF CLMMLSRDKW KENNKLLYDN KVEIAEYNDD YDDEEDEDEE
201: EEEDEEIYES EEELKSVKKS NKVRGRYKCE TCEKVFRSYQ ALGGHRASHK KIKLNNCENK NKNNNNNNDD EAEQLEVQHV VVVEKKIHEC PVCFRVFASG
301: QALGGHKRTH VIGSSTAAAT TTATAITTVS VRNSVATVSV RTTSTARVVG DSLIDLNLPA PMDDDEEEEG NVSQFEDSAV SDAEFVKL
001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
Arabidopsis Description
ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.