Factsheet for Bra040325.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37027	Canola	nucleus	100.0	100.0
Bra000372.1-P	Field mustard	mitochondrion, nucleus	75.44	68.39
AT2G45120.1	Thale cress	nucleus	73.31	65.61
Bra003422.1-P	Field mustard	nucleus	61.21	57.91
Bra007545.1-P	Field mustard	nucleus	61.21	57.91
Bra014483.1-P	Field mustard	nucleus	48.4	53.33
PGSC0003DMT400053945	Potato	cytosol	25.27	46.41
Solyc01g090840.2.1	Tomato	nucleus	46.26	40.25
KRH76140	Soybean	nucleus	51.6	39.73
PGSC0003DMT400066939	Potato	nucleus	46.62	39.7
VIT_15s0021g02720.t01	Wine grape	nucleus	50.53	39.55
KRH65408	Soybean	nucleus	50.89	36.86
Bra040741.1-P	Field mustard	nucleus	27.05	36.36
KRH75355	Soybean	nucleus	50.18	36.25
Bra012701.1-P	Field mustard	nucleus, plastid	26.33	34.58
Bra033666.1-P	Field mustard	nucleus	22.06	33.51
Bra012914.1-P	Field mustard	nucleus	23.13	30.52
GSMUA_Achr4P03310_001	Banana	nucleus	27.05	29.46
Bra029985.1-P	Field mustard	nucleus	23.13	29.41
GSMUA_Achr6P34890_001	Banana	nucleus, plastid	28.11	29.15
Bra010922.1-P	Field mustard	nucleus	23.84	28.76
GSMUA_Achr9P09370_001	Banana	nucleus	27.76	28.26
Bra037845.1-P	Field mustard	nucleus	23.13	28.14
Bra032845.1-P	Field mustard	nucleus	22.78	27.95
Bra022436.1-P	Field mustard	nucleus	26.33	27.72
Bra031834.1-P	Field mustard	nucleus	23.13	27.66
Bra009464.1-P	Field mustard	plastid	22.42	27.63
GSMUA_Achr4P32760_001	Banana	nucleus	32.03	27.52
Bra024448.1-P	Field mustard	nucleus	23.49	27.39
Bra038219.1-P	Field mustard	nucleus	25.62	27.27
Bra001752.1-P	Field mustard	nucleus	24.91	26.22
Bra012953.1-P	Field mustard	plastid	24.91	25.45
Bra029315.1-P	Field mustard	nucleus	18.15	21.89
Bra038491.1-P	Field mustard	nucleus	24.56	17.74
Bra018817.1-P	Field mustard	nucleus	23.49	17.69

Protein Annotations

EnsemblPlants:Bra040325.1	EnsemblPlants:Bra040325.1-P	EnsemblPlantsGene:Bra040325	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF304
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0002544258	UniProt:M4FGU7	MapMan:15.5.15	:	:	:

Description

AT2G45120 (E=7e-068) | zinc finger (C2H2 type) family protein

Coordinates

chrA04:+:18478813..18479658

Molecular Weight (calculated)

32109.4 Da

IEP (calculated)

8.408

GRAVY (calculated)

-1.073

Length

281 amino acids

Sequence
(BLAST)

001: MERYKCRFCF KSFINGSALG GHMRSHMLTL SSSKREERPS QLSEETESDA SSSSSSDGDK EEMEFGFSES ETESSRINPT RKRSKRTRKL GSFGFEFKKL
101: KTSQLGETEH HHSSASDTTT EEDLAFCLIM LSRDKWKQHN KTKQTLVEEE DESDHECKNR GRGGRGRFKC ETCGKAFKSY QALGGHRASH RKNKTFTKTE
201: HEEKTEYSVY EEKKIHQCPI CFRVFSSGQA LGGHKRSHGI NNIVSGRVPK EEVSVKQRMI DLNLPAPNED VETSMVVFDE R

Best Arabidopsis Sequence Match ( AT2G45120.1 )
(BLAST)

001: MERYKCRFCF KSFINGRALG GHMRSHMLTL SAERCVITGE AEEEVEERPS QLCDDDDDTE SDASSSSGEF DNQKMNRLDD ELEFDFAEDD DVESETESSR
101: INPTRRRSKR TRKLGSFDFD FEKLTTSQPS ELVAEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKKK QRVEEDETDH DSEDYKSSKS RGRFKCETCG
201: KVFKSYQALG GHRASHKKNK ACMTKTEQVE TEYVLGVKEK KVHECPICFR VFTSGQALGG HKRSHGSNIG AGRGLSVSQI VQIEEEVSVK QRMIDLNLPA
301: PNEEDETSLV FDEW

Arabidopsis Description

ZAT4Zinc finger protein ZAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.