Factsheet for Bra009464.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70236	Canola	nucleus, plastid	99.56	99.56
CDY51312	Canola	nucleus	87.72	90.91
AT5G04340.1	Thale cress	nucleus	83.77	80.25
Bra033666.1-P	Field mustard	nucleus	57.46	70.81
Bra010922.1-P	Field mustard	nucleus	68.86	67.38
Bra032845.1-P	Field mustard	nucleus	67.54	67.25
KRH15443	Soybean	nucleus	47.37	46.35
KRH05601	Soybean	nucleus	47.81	45.42
TraesCS4B01G079000.1	Wheat	nucleus	39.47	40.91
TraesCS4A01G236000.1	Wheat	nucleus	35.09	39.22
HORVU4Hr1G013460.1	Barley	nucleus	37.28	38.81
TraesCS4D01G077900.1	Wheat	nucleus	36.84	38.36
PGSC0003DMT400084751	Potato	nucleus	43.86	38.17
Bra012914.1-P	Field mustard	nucleus	35.09	37.56
Bra029985.1-P	Field mustard	nucleus	36.4	37.56
TraesCS5A01G070600.1	Wheat	nucleus	39.47	37.34
Os03t0610400-01	Rice	nucleus	38.6	36.97
TraesCS5D01G082700.1	Wheat	nucleus	38.6	36.97
Bra022436.1-P	Field mustard	nucleus	42.98	36.7
TraesCS5B01G076400.1	Wheat	nucleus	38.16	36.4
Bra037845.1-P	Field mustard	nucleus	36.84	36.36
Bra038219.1-P	Field mustard	nucleus	42.11	36.36
Bra031834.1-P	Field mustard	nucleus	37.28	36.17
Bra024448.1-P	Field mustard	nucleus	38.16	36.1
Bra001752.1-P	Field mustard	nucleus	42.11	35.96
GSMUA_Achr5P08730_001	Banana	nucleus	36.84	34.01
Os12t0583700-00	Rice	nucleus	36.4	33.6
Solyc01g107170.2.1	Tomato	nucleus	44.3	32.58
GSMUA_Achr6P24730_001	Banana	nucleus	35.53	29.35
Zm00001d030858_P001	Maize	nucleus	34.21	28.16
EES16240	Sorghum	nucleus	34.21	26.9
Bra014483.1-P	Field mustard	nucleus	25.44	22.75
Bra040325.1-P	Field mustard	nucleus	27.63	22.42
Bra003422.1-P	Field mustard	nucleus	28.51	21.89
Bra007545.1-P	Field mustard	nucleus	28.07	21.55
Bra000372.1-P	Field mustard	mitochondrion, nucleus	27.19	20.0
Bra018817.1-P	Field mustard	nucleus	32.46	19.84
Bra029315.1-P	Field mustard	nucleus	17.98	17.6
Bra012953.1-P	Field mustard	plastid	20.61	17.09
Bra040741.1-P	Field mustard	nucleus	14.04	15.31
Bra012701.1-P	Field mustard	nucleus, plastid	13.6	14.49
Bra038491.1-P	Field mustard	nucleus	15.79	9.25

Protein Annotations

MapMan:15.5.15	EnsemblPlantsGene:Bra009464	EnsemblPlants:Bra009464.1	EnsemblPlants:Bra009464.1-P	GO:GO:0000978	GO:GO:0001047
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212	GO:GO:0055062
GO:GO:2000280	InterPro:IPR013087	UniProt:M4CZ17	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR26374	PANTHER:PTHR26374:SF263	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0001B36C17	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

AT5G04340 (E=2e-071) C2H2, CZF2, ZAT6 | ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA10:+:16769144..16769830

Molecular Weight (calculated)

24153.2 Da

IEP (calculated)

9.343

GRAVY (calculated)

-0.586

Length

228 amino acids

Sequence
(BLAST)

001: MALEALSSPR LASPVPTLFQ DSAVGFHGSK GKRSKRSRSE FDRSLTEDEY IALCLMLLAR DGNRTRHLPS SSSSPPLLPT LTSTHLHKCS VCDKAFSSYQ
101: ALGGHKASHR KNSSQTQSSG GDEKSTSSAI TIASHGGGGG GSVKSHVCSI CNKSFATGQA LGGHKRCHYE GKNGSSSEGV GSTSHVSSGS HHHHRGFDLN
201: IPPIPEFSTV NGEEEVMSPM PTKKLRLE

Best Arabidopsis Sequence Match ( AT5G04340.1 )
(BLAST)

001: MALETLTSPR LSSPMPTLFQ DSALGFHGSK GKRSKRSRSE FDRQSLTEDE YIALCLMLLA RDGDRNRDLD LPSSSSSPPL LPPLPTPIYK CSVCDKAFSS
101: YQALGGHKAS HRKSFSLTQS AGGDELSTSS AITTSGISGG GGGSVKSHVC SICHKSFATG QALGGHKRCH YEGKNGGGVS SSVSNSEDVG STSHVSSGHR
201: GFDLNIPPIP EFSMVNGDEE VMSPMPAKKL RFDFPEKP

Arabidopsis Description

ZAT6Zinc finger protein ZAT6 [Source:UniProtKB/Swiss-Prot;Acc:O22533]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.