Factsheet for Bra018817.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50966	Canola	nucleus	98.39	98.39
Bra033666.1-P	Field mustard	nucleus	17.69	35.68
Bra009464.1-P	Field mustard	plastid	19.84	32.46
Bra032845.1-P	Field mustard	nucleus	19.84	32.31
Bra010922.1-P	Field mustard	nucleus	20.11	32.19
Bra037845.1-P	Field mustard	nucleus	19.03	30.74
Bra012914.1-P	Field mustard	nucleus	17.43	30.52
Bra001752.1-P	Field mustard	nucleus	21.72	30.34
Bra038219.1-P	Field mustard	nucleus	21.45	30.3
Bra024448.1-P	Field mustard	nucleus	19.3	29.88
Bra029985.1-P	Field mustard	nucleus	17.69	29.86
Bra031834.1-P	Field mustard	nucleus	18.77	29.79
Bra022436.1-P	Field mustard	nucleus	20.91	29.21
Bra040325.1-P	Field mustard	nucleus	17.69	23.49
Bra014483.1-P	Field mustard	nucleus	14.75	21.57
Bra007545.1-P	Field mustard	nucleus	16.35	20.54
Bra000372.1-P	Field mustard	mitochondrion, nucleus	16.62	20.0
Bra003422.1-P	Field mustard	nucleus	15.82	19.87
Bra012953.1-P	Field mustard	plastid	13.14	17.82
AT1G49900.1	Thale cress	nucleus	42.63	17.34
Bra029315.1-P	Field mustard	nucleus	10.19	16.31
Bra012701.1-P	Field mustard	nucleus, plastid	8.58	14.95
Bra040741.1-P	Field mustard	nucleus	8.31	14.83
Bra038491.1-P	Field mustard	nucleus	8.04	7.71

Protein Annotations

EnsemblPlants:Bra018817.1	EnsemblPlants:Bra018817.1-P	EnsemblPlantsGene:Bra018817	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF263
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000253EB6D	UniProt:M4DQM4	MapMan:15.5.15	:	:	:

Description

AT1G49900 (E=4e-041) | zinc finger (C2H2 type) family protein

Coordinates

chrA06:+:1776334..1777455

Molecular Weight (calculated)

41699.0 Da

IEP (calculated)

4.601

GRAVY (calculated)

-0.878

Length

373 amino acids

Sequence
(BLAST)

001: MDLLLFEALM QLPPSTRDTV VKVLDHASQN HPTDHDEDYP KRICLREEEE CATGTVCVEP RLQSSDSEEY SSSRSSKTVT EEECGQCSMD DDDDDETTSP
101: SSSETVEQRM ILYKPQQEEY EEDDVVSTEL TLGSSSAQPS RQQEEPSSSS PSEDDTTALL LVELCRIRPM QLQTQTQTPH KFDSYKCDVC GKEFTSYQAL
201: GGHKASHRVK LQQPLVENAN AEAGGKTRPR MAPSGKIHKC SICNVVFPTG QALGGHKRRH YEGVLSGNKR SHDEVIAGDR SSPNHESVET NMSGRKQSFV
301: GDHKRSHDEV IAGDKSSPKH ESDVTKNPGR SFIRLFDLNE FPLQEFDDNN MQEVDEYESA IVANKTLQLI DLI

Best Arabidopsis Sequence Match ( AT1G49900.1 )
(BLAST)

001: MDLKTLNQFS PLTKLTVPNH RDVQVRTDQL ITYERSKRKS SLHDDEDLIS KRRCLDFQRK IEDNECANDG VFVAPPRFKS GQVSIRQRSD APLSSQAVKH
101: DEFANDAFYK PWLDSFRLKR QRLGDDEDPS SSSSPSEVDI AALTLLQFSC DRRHPQTQTL TRPQPQTHKT QLQRPPPQLQ SQTQTAPPKS DLFKCSICEK
201: VFTSYQALGG HKASHSIKAA QLENAGADAG EKTRSKMLSP SGKIHKCDIC HVLFPTGQAL GGHKRRHYEG LLGGHKRGND EAVLKLSPNS NKSVVTKVLD
301: AEQSLRASDN IHKRNQDEVV PSRDKWSLSN VSVVKNVLDL KLSLGESDGG HKDSQDEVVV HEDKCSPSSN GSIVTNVSDP EQSVRRLIDL NNPPSLEFDQ
401: SRGGDVEEVE KEVVLALSSQ MKQPSKDVSA LIKRLEFAMQ ERKDGLLADD NVLIEMIMEL EGNISTTNGD DEDPYSEGRL IKVIEPIGLD EDDECVEIGL
501: GSCEQEPIQE RFGDDKDPSS DHGNVESIRL EEEDAVLFEP WLKSRLKSRD REQSQRQGFG EYEDCFSERR FLQEEEEECF GDDEDSFSDQ ISFLESNRLE
601: EEFEEEKEAA RFSNDNDFVE LLFQGIEQSK SKPKPKSCSY YDDDDDDDDD GDEDDDDDDD DVDPSSKDIR LEEENECENR AVIRPSLNSV APNQQRFGDD
701: EVPSSSSSLS KDETAALCPT PHSQTQPQSQ TQLQKVTQPQ TQMLPKSDSY QCNVCGRELP SYQALGGHKA SHRTKPPVEN ATGEKMRPKK LAPSGKIHKC
801: SICHREFSTG QSLGGHKRLH YEGVLRGHKR SQEKEAVSQG DKLSPSGNGS VVTHVPDPKQ SRKGLIVINK VPSPEFNDPG DKDILEGESA LLANKLEQDR
901: GITSTRMING LKFFNFL

Arabidopsis Description

C2H2 type zinc finger transcription factor family [Source:UniProtKB/TrEMBL;Acc:Q9C538]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.