Factsheet for Bra000372.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83402	Canola	nucleus	90.97	94.63
CDX95629	Canola	nucleus	82.58	93.43
Bra040325.1-P	Field mustard	nucleus	68.39	75.44
AT2G45120.1	Thale cress	nucleus	71.61	70.7
Bra003422.1-P	Field mustard	nucleus	53.55	55.89
Bra007545.1-P	Field mustard	nucleus	53.23	55.56
Bra014483.1-P	Field mustard	nucleus	43.55	52.94
PGSC0003DMT400053945	Potato	cytosol	22.58	45.75
Solyc01g090840.2.1	Tomato	nucleus	41.61	39.94
VIT_15s0021g02720.t01	Wine grape	nucleus	46.13	39.83
PGSC0003DMT400066939	Potato	nucleus	41.29	38.79
KRH76140	Soybean	nucleus	44.19	37.53
KRH75355	Soybean	nucleus	44.52	35.48
KRH65408	Soybean	nucleus	44.19	35.31
Bra033666.1-P	Field mustard	nucleus	20.65	34.59
Bra040741.1-P	Field mustard	nucleus	22.58	33.49
Bra012701.1-P	Field mustard	nucleus, plastid	22.26	32.24
Bra012914.1-P	Field mustard	nucleus	21.29	30.99
GSMUA_Achr4P03310_001	Banana	nucleus	25.16	30.23
Bra029985.1-P	Field mustard	nucleus	21.29	29.86
GSMUA_Achr9P09370_001	Banana	nucleus	26.45	29.71
Bra010922.1-P	Field mustard	nucleus	22.26	29.61
Bra032845.1-P	Field mustard	nucleus	21.29	28.82
GSMUA_Achr4P32760_001	Banana	nucleus	30.0	28.44
GSMUA_Achr6P34890_001	Banana	nucleus, plastid	24.52	28.04
Bra038219.1-P	Field mustard	nucleus	23.55	27.65
Bra037845.1-P	Field mustard	nucleus	20.32	27.27
Bra012953.1-P	Field mustard	plastid	24.19	27.27
Bra009464.1-P	Field mustard	plastid	20.0	27.19
Bra022436.1-P	Field mustard	nucleus	23.23	26.97
Bra031834.1-P	Field mustard	nucleus	20.32	26.81
Bra001752.1-P	Field mustard	nucleus	22.9	26.59
Bra024448.1-P	Field mustard	nucleus	20.32	26.14
Bra029315.1-P	Field mustard	nucleus	17.42	23.18
Bra018817.1-P	Field mustard	nucleus	20.0	16.62
Bra038491.1-P	Field mustard	nucleus	20.65	16.45

Protein Annotations

EnsemblPlants:Bra000372.1	EnsemblPlants:Bra000372.1-P	EnsemblPlantsGene:Bra000372	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF304
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000253FE35	UniProt:M4C844	MapMan:15.5.15	:	:	:

Description

AT2G45120 (E=8e-095) | zinc finger (C2H2 type) family protein

Coordinates

chrA03:+:10789860..10794409

Molecular Weight (calculated)

35714.3 Da

IEP (calculated)

6.514

GRAVY (calculated)

-1.148

Length

310 amino acids

Sequence
(BLAST)

001: MERYKCRFCF KSFLNGRALG GHMRSHMLAL PSKRELYELT ERPSQLSEET ESDASSSSDE QEEEDHHVNC GECSYREFES ETESSRMNPT RKRSKRTRKL
101: GSFDFDDFKK VRTSQPGGEV VTEPEHHSSA SDTTTEEDLA FCLIMLSRDK WKQQKKKTIV VEEEDDERED YKPSKNRGGR GRFKCETCGK VFNSYQALGG
201: HRASHKKNKT FTTMTSTKTE HEKTLTESEK VHQCPICFRV FTSGQALGGH KRSHGSNNIG SRRELSVNQS VRSIKEEEEE EEVSVKQRMI DLNLPAPNED
301: DETSIVFNEW

Best Arabidopsis Sequence Match ( AT2G45120.1 )
(BLAST)

001: MERYKCRFCF KSFINGRALG GHMRSHMLTL SAERCVITGE AEEEVEERPS QLCDDDDDTE SDASSSSGEF DNQKMNRLDD ELEFDFAEDD DVESETESSR
101: INPTRRRSKR TRKLGSFDFD FEKLTTSQPS ELVAEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKKK QRVEEDETDH DSEDYKSSKS RGRFKCETCG
201: KVFKSYQALG GHRASHKKNK ACMTKTEQVE TEYVLGVKEK KVHECPICFR VFTSGQALGG HKRSHGSNIG AGRGLSVSQI VQIEEEVSVK QRMIDLNLPA
301: PNEEDETSLV FDEW

Arabidopsis Description

ZAT4Zinc finger protein ZAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.