Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0129g00030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | VIT_07s0129g00030.t01 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75355 | Soybean | nucleus | 60.45 | 55.78 |
| PGSC0003DMT400053945 | Potato | cytosol | 23.4 | 54.9 |
| KRH76140 | Soybean | nucleus | 55.43 | 54.52 |
| Solyc01g090840.2.1 | Tomato | nucleus | 47.63 | 52.94 |
| PGSC0003DMT400066939 | Potato | nucleus | 48.47 | 52.73 |
| Bra040325.1-P | Field mustard | nucleus | 39.55 | 50.53 |
| CDY37027 | Canola | nucleus | 39.55 | 50.53 |
| KRH65408 | Soybean | nucleus | 54.6 | 50.52 |
| AT3G60580.1 | Thale cress | nucleus | 39.83 | 49.65 |
| CDY27394 | Canola | nucleus | 39.0 | 49.12 |
| CDX83402 | Canola | nucleus | 40.67 | 48.99 |
| CDX95629 | Canola | nucleus | 37.33 | 48.91 |
| CDY41155 | Canola | nucleus | 33.43 | 48.39 |
| CDX71799 | Canola | nucleus | 34.82 | 48.08 |
| VIT_00s0229g00050.t01 | Wine grape | nucleus | 43.18 | 47.99 |
| AT2G45120.1 | Thale cress | nucleus | 41.5 | 47.45 |
| CDY71582 | Canola | nucleus | 35.93 | 47.43 |
| CDX89061 | Canola | nucleus | 34.26 | 46.77 |
| Bra000372.1-P | Field mustard | mitochondrion, nucleus | 39.83 | 46.13 |
| Bra007545.1-P | Field mustard | nucleus | 38.16 | 46.13 |
| Bra003422.1-P | Field mustard | nucleus | 38.16 | 46.13 |
| CDX67836 | Canola | nucleus | 37.6 | 45.76 |
| CDY48363 | Canola | nucleus | 33.7 | 42.16 |
| Bra014483.1-P | Field mustard | nucleus | 29.8 | 41.96 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 24.51 | 34.11 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 25.35 | 33.58 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 21.73 | 33.48 |
| VIT_18s0001g09230.t01 | Wine grape | nucleus | 20.89 | 32.19 |
| VIT_03s0091g00690.t01 | Wine grape | nucleus | 20.33 | 31.06 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 23.68 | 30.8 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 27.3 | 29.97 |
Protein Annotations
| EntrezGene:100242775 | wikigene:100242775 | MapMan:15.5.15 | Gene3D:3.30.160.60 | ProteinID:CCB43838 | ProteinID:CCB43838.1 |
| ncoils:Coil | UniProt:F6GV56 | EMBL:FN594952 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 | EntrezGene:LOC100242775 |
| wikigene:LOC100242775 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 |
| SMART:SM00355 | SUPFAM:SSF57667 | TIGR:TC70116 | UniParc:UPI0001984D6E | ArrayExpress:VIT_15s0021g02720 | EnsemblPlantsGene:VIT_15s0021g02720 |
| EnsemblPlants:VIT_15s0021g02720.t01 | unigene:Vvi.2332 | RefSeq:XP_002278670 | RefSeq:XP_002278670.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr15:+:13755715..13757195
Molecular Weight (calculated)
40179.6 Da
IEP (calculated)
5.202
GRAVY (calculated)
-0.957
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKHKCKLCF RSFSNGRALG GHMRSHMLNL PIPPKQEQPS QIGDDETESA SSSSSSEEEG EDKGLGYELR ENPKKSIRLA DPEFSFAVDA ASVVLQDRES
101: ETESSKNPTR RRSKRNRKLG LADPPRFHEQ KKIKLDKLSK TESWADPEPV SSISDATTEE DVAFCLMMLS RDKWIEEQEN QERRHDEEDE EEAEAEAEEE
201: ERFVDETDDS DELKLFKTRA RGKYKCETCN KVFRSYQALG GHRASHKKIK ACAPIKEVEF EPENASNPCL ADAKIHECPV CFRKFTSGQA LGGHKRSHIS
301: GSAAAAAAPA PPPPPRKASS KVGDSMIDLN LPAPIEEDDI SQIEHSAVSD AEFVNPIRR
101: ETESSKNPTR RRSKRNRKLG LADPPRFHEQ KKIKLDKLSK TESWADPEPV SSISDATTEE DVAFCLMMLS RDKWIEEQEN QERRHDEEDE EEAEAEAEEE
201: ERFVDETDDS DELKLFKTRA RGKYKCETCN KVFRSYQALG GHRASHKKIK ACAPIKEVEF EPENASNPCL ADAKIHECPV CFRKFTSGQA LGGHKRSHIS
301: GSAAAAAAPA PPPPPRKASS KVGDSMIDLN LPAPIEEDDI SQIEHSAVSD AEFVNPIRR
001: MERYKCRFCF KSFINGRALG GHMRSHMLTL SAERCVITGE AEEEVEERPS QLCDDDDDTE SDASSSSGEF DNQKMNRLDD ELEFDFAEDD DVESETESSR
101: INPTRRRSKR TRKLGSFDFD FEKLTTSQPS ELVAEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKKK QRVEEDETDH DSEDYKSSKS RGRFKCETCG
201: KVFKSYQALG GHRASHKKNK ACMTKTEQVE TEYVLGVKEK KVHECPICFR VFTSGQALGG HKRSHGSNIG AGRGLSVSQI VQIEEEVSVK QRMIDLNLPA
301: PNEEDETSLV FDEW
101: INPTRRRSKR TRKLGSFDFD FEKLTTSQPS ELVAEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKKK QRVEEDETDH DSEDYKSSKS RGRFKCETCG
201: KVFKSYQALG GHRASHKKNK ACMTKTEQVE TEYVLGVKEK KVHECPICFR VFTSGQALGG HKRSHGSNIG AGRGLSVSQI VQIEEEVSVK QRMIDLNLPA
301: PNEEDETSLV FDEW
Arabidopsis Description
ZAT4Zinc finger protein ZAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.