Factsheet for VIT_03s0091g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09230.t01	Wine grape	nucleus	66.38	66.95
VIT_07s0129g00240.t01	Wine grape	nucleus	57.87	58.37
KRH52082	Soybean	nucleus	57.87	58.37
KRH61394	Soybean	nucleus	57.02	57.51
TraesCS4A01G236000.1	Wheat	nucleus	39.15	45.1
TraesCS4D01G077900.1	Wheat	nucleus	41.28	44.29
TraesCS4B01G079000.1	Wheat	nucleus	41.28	44.09
HORVU4Hr1G013460.1	Barley	nucleus	40.43	43.38
TraesCS5B01G076400.1	Wheat	nucleus	42.55	41.84
TraesCS5D01G082700.1	Wheat	nucleus	42.13	41.6
TraesCS5A01G070600.1	Wheat	nucleus	42.55	41.49
Os12t0583700-00	Rice	nucleus	42.13	40.08
Os03t0610400-01	Rice	nucleus	40.0	39.5
GSMUA_Achr5P08730_001	Banana	nucleus	39.15	37.25
Zm00001d030858_P001	Maize	nucleus	40.0	33.94
GSMUA_Achr6P24730_001	Banana	nucleus	37.45	31.88
EES16240	Sorghum	nucleus	38.72	31.38
VIT_15s0021g02720.t01	Wine grape	nucleus	31.06	20.33
VIT_00s0229g00050.t01	Wine grape	nucleus	24.26	17.65

Protein Annotations

EntrezGene:100258264	wikigene:100258264	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:AM453681	ProteinID:CAN61204
ProteinID:CAN61204.1	ProteinID:CCB47705	ProteinID:CCB47705.1	UniProt:F6H663	EMBL:FN595242	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008150	GO:GO:0009719	GO:GO:0010200	InterPro:IPR013087	EntrezGene:LOC100258264	wikigene:LOC100258264
PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF319	SMART:SM00355
SUPFAM:SSF57667	TIGR:TC63188	TIGR:TC67755	UniParc:UPI0001982E4B	ArrayExpress:VIT_03s0091g00690	EnsemblPlantsGene:VIT_03s0091g00690
EnsemblPlants:VIT_03s0091g00690.t01	unigene:Vvi.11706	RefSeq:XP_002264302	RefSeq:XP_002264302.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:7125371..7126295

Molecular Weight (calculated)

25658.0 Da

IEP (calculated)

8.390

GRAVY (calculated)

-0.712

Length

235 amino acids

Sequence
(BLAST)

001: MALEALNSPT TMSPTFKFEE AELHSLEPWT KRKRSRRPRF ENPSTEEEYL ALCLIMLARG GATTREESPM PLRAVPPPPP LNLSYKCNVC NKAFSSYQAL
101: GGHKASHRKS STDDASTSAN TTTTAGSSAL NPSGKTHECS ICHRTFPTGQ ALGGHKRCHY DGGSSGVTSS EGAVSSHSHR DFDLNLPALP DFWPRFRVDG
201: GRKSQTGVEQ EVESPLPAKK PRFLFPVGDM NSSHE

Best Arabidopsis Sequence Match ( AT1G27730.1 )
(BLAST)

001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL

Arabidopsis Description

ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.