Factsheet for VIT_00s0229g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57408	Soybean	nucleus	43.65	53.21
KRH04135	Soybean	nucleus	40.25	49.43
KRH77360	Soybean	nucleus	45.2	48.99
KRH28087	Soybean	nucleus	43.65	48.96
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	34.06	47.83
CDY50848	Canola	nucleus	30.03	46.41
CDY09671	Canola	nucleus	28.48	46.0
Bra040741.1-P	Field mustard	nucleus	29.72	45.93
CDY53641	Canola	nucleus	29.72	45.93
CDY40527	Canola	nucleus	27.24	45.36
GSMUA_Achr2P18480_001	Banana	nucleus	34.37	45.31
CDY32274	Canola	nucleus	27.55	45.18
AT4G16610.1	Thale cress	nucleus	28.17	44.61
PGSC0003DMT400030986	Potato	nucleus	41.8	44.26
Solyc06g060740.1.1	Tomato	nucleus	41.49	43.79
CDY69391	Canola	nucleus	28.79	43.46
VIT_15s0021g02720.t01	Wine grape	nucleus	47.99	43.18
Bra012701.1-P	Field mustard	nucleus, plastid	28.48	42.99
GSMUA_Achr4P26920_001	Banana	mitochondrion	36.22	42.86
PGSC0003DMT400012154	Potato	nucleus	38.39	41.61
GSMUA_Achr5P15450_001	Banana	mitochondrion	35.6	41.52
Solyc08g078590.1.1	Tomato	nucleus	34.67	39.86
GSMUA_Achr4P12160_001	Banana	mitochondrion	23.84	39.49
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	34.06	37.16
TraesCS2A01G413100.1	Wheat	nucleus	33.44	36.73
HORVU2Hr1G097410.1	Barley	nucleus	33.13	36.39
Zm00001d002731_P001	Maize	nucleus	34.37	36.16
GSMUA_Achr1P24150_001	Banana	mitochondrion	29.72	36.09
GSMUA_Achr1P01550_001	Banana	nucleus	32.82	36.05
TraesCS6A01G248700.1	Wheat	nucleus	34.67	35.67
TraesCS1A01G211800.1	Wheat	nucleus	36.84	35.63
TraesCS2D01G410300.1	Wheat	nucleus	33.75	35.5
TraesCS1B01G225500.1	Wheat	nucleus	37.46	35.48
HORVU6Hr1G063280.1	Barley	mitochondrion, nucleus, plastid	34.37	35.46
HORVU0Hr1G030680.1	Barley	nucleus	34.37	35.46
TraesCS6B01G276100.1	Wheat	nucleus	34.37	35.35
TraesCS2B01G431800.1	Wheat	nucleus	33.75	35.28
TraesCS6D01G230800.1	Wheat	nucleus	34.37	35.24
Os10t0555300-01	Rice	mitochondrion, nucleus	39.01	35.1
HORVU1Hr1G054170.1	Barley	nucleus	37.15	34.99
TraesCS1D01G214900.1	Wheat	nucleus	36.84	34.9
Zm00001d029917_P001	Maize	nucleus	36.53	34.6
Zm00001d047102_P001	Maize	nucleus	36.22	34.41
GSMUA_Achr4P05560_001	Banana	nucleus	24.46	34.35
EES11238	Sorghum	mitochondrion	35.29	34.23
OQU85696	Sorghum	mitochondrion	34.37	32.94
Os02t0659500-01	Rice	mitochondrion	34.67	32.84
HORVU2Hr1G097440.1	Barley	mitochondrion	21.98	32.57
Zm00001d051371_P001	Maize	mitochondrion	33.13	31.56
EER91950	Sorghum	mitochondrion, plastid	36.22	30.31
Zm00001d017497_P001	Maize	mitochondrion	29.1	29.75
GSMUA_AchrUn_...	Banana	nucleus	19.81	28.07
VIT_03s0091g00690.t01	Wine grape	nucleus	17.65	24.26
VIT_07s0129g00240.t01	Wine grape	nucleus	17.03	23.61
Bra038491.1-P	Field mustard	nucleus	27.86	23.14
GSMUA_AchrUn_...	Banana	mitochondrion	26.01	22.76
VIT_18s0001g09230.t01	Wine grape	nucleus	16.41	22.75
GSMUA_Achr7P04600_001	Banana	nucleus	17.96	16.07

Protein Annotations

EntrezGene:100852790	wikigene:100852790	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:AM427487	ProteinID:CAN66783
ProteinID:CAN66783.1	ProteinID:CCB60303	ProteinID:CCB60303.1	UniProt:F6I037	EMBL:FN596504	GO:GO:0003674
GO:GO:0003676	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	InterPro:IPR013087	EntrezGene:LOC100852790	wikigene:LOC100852790	PFAM:PF13912	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000210A571
ArrayExpress:VIT_00s0229g00050	EnsemblPlantsGene:VIT_00s0229g00050	EnsemblPlants:VIT_00s0229g00050.t01	RefSeq:XP_003635129	RefSeq:XP_003635129.1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:15415314..15416392

Molecular Weight (calculated)

35713.3 Da

IEP (calculated)

5.969

GRAVY (calculated)

-0.857

Length

323 amino acids

Sequence
(BLAST)

001: MEKHKCKLCS RRFSSGRALG GHMRSHLATL PIPPKTPQHS DRTDPVSSSS SSSSSEEEEE GEEQRSEGEE KALAYGLREN PKRSFRLADP EFSFAVDAGS
101: VVQDRESETE SRNPTRRRSK RAWKLGVPNQ GLDLKKPKLG KSETTESPTE LEPVSSVSNT WPEEDIAMCL VMLSRDTWTR SDEDQDIKDE EERSVDETCK
201: KVFSSFEASP VEKVVNKASK KKIKACFEDE SNPENGGNVK IYECPFCSRV FRSGQALGGH KRSHLLNNST TTTAAAAAAA SANSEKFQNG VIDLNLPAPP
301: EDYAFSQHSA VSYAEFIANT IKC

Best Arabidopsis Sequence Match ( AT2G45120.1 )
(BLAST)

001: MERYKCRFCF KSFINGRALG GHMRSHMLTL SAERCVITGE AEEEVEERPS QLCDDDDDTE SDASSSSGEF DNQKMNRLDD ELEFDFAEDD DVESETESSR
101: INPTRRRSKR TRKLGSFDFD FEKLTTSQPS ELVAEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKKK QRVEEDETDH DSEDYKSSKS RGRFKCETCG
201: KVFKSYQALG GHRASHKKNK ACMTKTEQVE TEYVLGVKEK KVHECPICFR VFTSGQALGG HKRSHGSNIG AGRGLSVSQI VQIEEEVSVK QRMIDLNLPA
301: PNEEDETSLV FDEW

Arabidopsis Description

ZAT4Zinc finger protein ZAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.