Factsheet for PGSC0003DMT400012154

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078590.1.1	Tomato	nucleus	80.54	85.41
PGSC0003DMT400030986	Potato	nucleus	56.04	54.75
KRH57408	Soybean	nucleus	40.27	45.28
KRH04135	Soybean	nucleus	39.6	44.87
KRH28087	Soybean	nucleus	41.61	43.06
KRH77360	Soybean	nucleus	41.95	41.95
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	31.88	41.3
GSMUA_Achr4P26920_001	Banana	mitochondrion	36.24	39.56
VIT_00s0229g00050.t01	Wine grape	nucleus	41.61	38.39
GSMUA_Achr5P15450_001	Banana	mitochondrion	34.56	37.18
CDY40527	Canola	nucleus	23.83	36.6
CDY09671	Canola	nucleus	24.5	36.5
GSMUA_Achr4P12160_001	Banana	mitochondrion	23.83	36.41
AT4G16610.1	Thale cress	nucleus	24.83	36.27
CDY32274	Canola	nucleus	23.83	36.04
GSMUA_Achr2P18480_001	Banana	nucleus	29.53	35.92
CDY50848	Canola	nucleus	25.17	35.89
CDY53641	Canola	nucleus	24.83	35.41
Bra040741.1-P	Field mustard	nucleus	24.83	35.41
CDY69391	Canola	nucleus	24.5	34.11
Bra012701.1-P	Field mustard	nucleus, plastid	24.16	33.64
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	32.55	32.77
GSMUA_Achr4P05560_001	Banana	nucleus	24.16	31.3
PGSC0003DMT400066939	Potato	nucleus	34.23	30.91
PGSC0003DMT400053945	Potato	cytosol	15.77	30.72
GSMUA_Achr1P01550_001	Banana	nucleus	30.2	30.61
TraesCS1A01G211800.1	Wheat	nucleus	33.56	29.94
TraesCS6A01G248700.1	Wheat	nucleus	31.54	29.94
Zm00001d029917_P001	Maize	nucleus	33.89	29.62
TraesCS6D01G230800.1	Wheat	nucleus	31.21	29.52
Zm00001d047102_P001	Maize	nucleus	33.56	29.41
HORVU0Hr1G030680.1	Barley	nucleus	30.87	29.39
HORVU6Hr1G063280.1	Barley	mitochondrion, nucleus, plastid	30.87	29.39
TraesCS1D01G214900.1	Wheat	nucleus	33.56	29.33
TraesCS1B01G225500.1	Wheat	nucleus	33.56	29.33
GSMUA_Achr1P24150_001	Banana	mitochondrion	26.17	29.32
TraesCS6B01G276100.1	Wheat	nucleus	30.87	29.3
HORVU1Hr1G054170.1	Barley	nucleus	33.56	29.15
Os10t0555300-01	Rice	mitochondrion, nucleus	34.9	28.97
TraesCS2A01G413100.1	Wheat	nucleus	28.52	28.91
HORVU2Hr1G097410.1	Barley	nucleus	28.52	28.91
PGSC0003DMT400030168	Potato	nucleus	20.13	28.71
OQU85696	Sorghum	mitochondrion	32.21	28.49
Zm00001d002731_P001	Maize	nucleus	29.19	28.34
TraesCS2D01G410300.1	Wheat	nucleus	28.86	28.01
PGSC0003DMT400091896	Potato	nucleus	17.79	27.89
TraesCS2B01G431800.1	Wheat	nucleus	28.86	27.83
Zm00001d051371_P001	Maize	mitochondrion	30.87	27.14
EER91950	Sorghum	mitochondrion, plastid	34.9	26.94
EES11238	Sorghum	mitochondrion	29.53	26.43
Os02t0659500-01	Rice	mitochondrion	29.53	25.81
HORVU2Hr1G097440.1	Barley	mitochondrion	18.79	25.69
Zm00001d017497_P001	Maize	mitochondrion	27.18	25.63
PGSC0003DMT400086329	Potato	nucleus, plastid	17.79	22.94
PGSC0003DMT400055391	Potato	nucleus	14.77	22.8
PGSC0003DMT400072661	Potato	nucleus	19.46	22.39
GSMUA_AchrUn_...	Banana	mitochondrion	26.51	21.41
PGSC0003DMT400084751	Potato	nucleus	18.79	21.37
GSMUA_AchrUn_...	Banana	nucleus	16.11	21.05
PGSC0003DMT400006126	Potato	nucleus	19.8	20.49
PGSC0003DMT400085102	Potato	nucleus	15.1	20.0
PGSC0003DMT400040388	Potato	cytosol	13.76	19.34
Bra038491.1-P	Field mustard	nucleus	25.17	19.28
PGSC0003DMT400095976	Potato	nucleus	14.77	18.49
PGSC0003DMT400024799	Potato	cytosol	10.07	15.38
GSMUA_Achr7P04600_001	Banana	nucleus	15.77	13.02

Protein Annotations

EnsemblPlants:PGSC0003DMT400012154	EnsemblPlantsGene:PGSC0003DMG400004763	EntrezGene:102593706	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185
PFAM:PF13912	PFscan:PS50157	PGSC:PGSC0003DMG400004763	RefSeq:XP_006355440.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000296754F	UniProt:M1A0T5	MapMan:15.5.15	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004763]

Coordinates

chr8:-:52251374..52252489

Molecular Weight (calculated)

33964.3 Da

IEP (calculated)

8.832

GRAVY (calculated)

-0.896

Length

298 amino acids

Sequence
(BLAST)

001: MEKHKCKLCS KKFLNGKALG GHMRSHLIPL PLPPKTPPLN QDSGGRSEST LSLCSSENQE DKVVEEKDFN YGLRENPKKS FRMIDPEFLE DGYVVQDRES
101: ETESEKNTEN RRRSKRNRRM VENDERIEEV KVKIADFRSL NLYSDDADIA MCLMMLSTDS KSKPKQHQCG ICYKVFKTSQ ALGSHKTIHK NRNNYDNDEE
201: KARKISSKRK LKLVSHVDEK LHECPSCGKF FQSGQALGGH KRSHLVVRSS STITGSCSST NSANLPNRFI DLNMPAPLEV NEFCQPDFSA VKFQQEFA

Best Arabidopsis Sequence Match ( AT1G02030.1 )
(BLAST)

001: MEERHKCKLC WKSFANGRAL GGHMRSHMLI HPLPSQPESY SSSMADPGFV LQDRESETES SKKPSRKRSR LNRRSISSLR HQQSNEEGKS ETARAADIKI
101: GVQELSESCT EQEPMSSVSD AATTEEDVAL SLMLLSRDKW EKEEEESDEE RWKKKRNKWF ECETCEKVFK SYQALGGHRA SHKKKIAETD QLGSDELKKK
201: KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR RSGIIISLID LNLPAPSEEE EMASSVF

Arabidopsis Description

ZAT1Zinc finger protein ZAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q39092]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.