Factsheet for PGSC0003DMT400055391

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077980.1.1	Tomato	nucleus, plastid	92.23	68.46
PGSC0003DMT400085102	Potato	nucleus	78.24	67.11
PGSC0003DMT400095976	Potato	nucleus	78.24	63.45
PGSC0003DMT400086329	Potato	nucleus, plastid	73.06	61.04
PGSC0003DMT400040388	Potato	cytosol	66.32	60.38
PGSC0003DMT400024799	Potato	cytosol	60.1	59.49
PGSC0003DMT400091896	Potato	nucleus	51.3	52.11
PGSC0003DMT400006126	Potato	nucleus	77.72	52.08
PGSC0003DMT400072661	Potato	nucleus	68.91	51.35
PGSC0003DMT400030168	Potato	nucleus	50.26	46.41
KRH15443	Soybean	nucleus	50.78	42.06
KRH05601	Soybean	nucleus	51.3	41.25
TraesCS4A01G236000.1	Wheat	nucleus	39.38	37.25
TraesCS4D01G077900.1	Wheat	nucleus	38.86	34.25
TraesCS4B01G079000.1	Wheat	nucleus	38.86	34.09
HORVU4Hr1G013460.1	Barley	nucleus	38.34	33.79
PGSC0003DMT400084751	Potato	nucleus	43.01	31.68
Os12t0583700-00	Rice	nucleus	40.41	31.58
TraesCS5D01G082700.1	Wheat	nucleus	38.34	31.09
TraesCS5B01G076400.1	Wheat	nucleus	37.82	30.54
TraesCS5A01G070600.1	Wheat	nucleus	37.82	30.29
Os03t0610400-01	Rice	nucleus	36.79	29.83
GSMUA_Achr5P08730_001	Banana	nucleus	37.31	29.15
GSMUA_Achr6P24730_001	Banana	nucleus	39.9	27.9
Zm00001d030858_P001	Maize	nucleus	36.27	25.27
PGSC0003DMT400053945	Potato	cytosol	19.17	24.18
EES16240	Sorghum	nucleus	34.72	23.1
PGSC0003DMT400066939	Potato	nucleus	26.42	15.45
PGSC0003DMT400012154	Potato	nucleus	22.8	14.77
PGSC0003DMT400030986	Potato	nucleus	21.76	13.77

Protein Annotations

EnsemblPlants:PGSC0003DMT400055391	EnsemblPlantsGene:PGSC0003DMG400021508	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF263	PFAM:PF13912	PFscan:PS50157
PGSC:PGSC0003DMG400021508	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000295CCEF
UniProt:M1BXU1	MapMan:15.5.15	:	:	:	:

Description

C2H2-type zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021508]

Coordinates

chr4:+:67179446..67180400

Molecular Weight (calculated)

20082.4 Da

IEP (calculated)

8.162

GRAVY (calculated)

-0.544

Length

193 amino acids

Sequence
(BLAST)

001: MLARSDGSAN QVRSLPPPVP VMKIHAPSEE KMLYKCSVCG KGFGSYQALG GHKASHRKLI AGISGGGDDQ STTSTTTNAT GTTSSGNGSG RTHECSICHK
101: CFPTGQALGG HKRCHYDGGN GNGNANSSVS ASVGVTSSEG VGSTISHRDF DLNIPALPEF WPGFGSGEDE VESPHPAKKS RLSLPPKFEL FQH

Best Arabidopsis Sequence Match ( AT1G27730.1 )
(BLAST)

001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL

Arabidopsis Description

ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.