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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 2
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400085102 Potato nucleus 71.53 91.56
PGSC0003DMT400072661 Potato nucleus 80.9 89.96
PGSC0003DMT400040388 Potato cytosol 65.28 88.68
PGSC0003DMT400086329 Potato nucleus, plastid 70.83 88.31
PGSC0003DMT400095976 Potato nucleus 72.92 88.24
PGSC0003DMT400024799 Potato cytosol 58.68 86.67
Solyc04g077980.1.1 Tomato nucleus, plastid 70.49 78.08
PGSC0003DMT400055391 Potato nucleus 52.08 77.72
PGSC0003DMT400091896 Potato nucleus 39.24 59.47
PGSC0003DMT400030168 Potato nucleus 41.32 56.94
KRH15443 Soybean nucleus 38.89 48.07
KRH05601 Soybean nucleus 39.24 47.08
TraesCS4A01G236000.1 Wheat nucleus 27.78 39.22
TraesCS5B01G076400.1 Wheat nucleus 31.25 37.66
TraesCS4D01G077900.1 Wheat nucleus 28.47 37.44
TraesCS5D01G082700.1 Wheat nucleus 30.9 37.4
TraesCS4B01G079000.1 Wheat nucleus 28.47 37.27
HORVU4Hr1G013460.1 Barley nucleus 27.78 36.53
TraesCS5A01G070600.1 Wheat nucleus 30.56 36.51
Os12t0583700-00 Rice nucleus 30.56 35.63
PGSC0003DMT400084751 Potato nucleus 31.94 35.11
GSMUA_Achr5P08730_001 Banana nucleus 29.86 34.82
Os03t0610400-01 Rice nucleus 27.08 32.77
GSMUA_Achr6P24730_001 Banana nucleus 29.86 31.16
Zm00001d030858_P001 Maize nucleus 27.78 28.88
PGSC0003DMT400053945 Potato cytosol 14.58 27.45
EES16240 Sorghum nucleus 27.43 27.24
PGSC0003DMT400066939 Potato nucleus 22.92 20.0
PGSC0003DMT400012154 Potato nucleus 20.49 19.8
PGSC0003DMT400030986 Potato nucleus 20.83 19.67
Protein Annotations
EnsemblPlants:PGSC0003DMT400006126EnsemblPlantsGene:PGSC0003DMG400002383Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typePANTHER:PTHR26374PANTHER:PTHR26374:SF263PFAM:PF13912
PFscan:PS50157PGSC:PGSC0003DMG400002383ScanProsite:PS00028SEG:segSMART:SM00355SUPFAM:SSF57667
UniParc:UPI0002947F70UniProt:M0ZQV2MapMan:15.5.15:::
Description
C2H2-type zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002383]
Coordinates
chr9:+:35236021..35237026
Molecular Weight (calculated)
31833.3 Da
IEP (calculated)
6.925
GRAVY (calculated)
-0.736
Length
288 amino acids
Sequence
(BLAST)
001: MALEALNSPT GTSNPQTFQF ERKGQQQLRY LENWTKGKRS KRSRSMDRQP TEEEYLALCL IMLARSDGSV NQVRSLPPPV PVMKIHTTLE KIEEKMLYKC
101: SVCGKGFRSY QALGGHKASH QKLIAGGGGG DDQSTTSTTT NATGITSSGN SNGSGRTHEC LICHKCFPTG QALGGHNRYH YDGDNANSSV STSVGVTSEE
201: DVGSTISHPY FDLNIRALPE FCPGFGSGKD EREMSRVGVE LMEIEKEVTE EMRDGDDEVK RILPWNKTDY STRNCEIGTR LERFGSFN
Best Arabidopsis Sequence Match ( AT1G27730.1 )
(BLAST)
001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
Arabidopsis Description
ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.