Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G079000.1 | Wheat | nucleus | 87.67 | 87.27 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 79.0 | 84.8 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 84.02 | 84.02 |
| Os03t0610400-01 | Rice | nucleus | 71.69 | 65.97 |
| CDY02102 | Canola | nucleus | 32.88 | 45.57 |
| CDY23027 | Canola | nucleus | 33.33 | 42.94 |
| PGSC0003DMT400091896 | Potato | nucleus | 36.99 | 42.63 |
| CDY22361 | Canola | nucleus | 35.62 | 42.16 |
| CDX81313 | Canola | nucleus | 35.16 | 41.4 |
| PGSC0003DMT400030168 | Potato | nucleus | 39.27 | 41.15 |
| Bra033666.1-P | Field mustard | nucleus | 34.7 | 41.08 |
| VIT_18s0001g09230.t01 | Wine grape | nucleus | 43.38 | 40.77 |
| CDY30794 | Canola | nucleus | 35.16 | 40.74 |
| Solyc12g088390.1.1 | Tomato | nucleus | 36.99 | 40.5 |
| AT3G49930.1 | Thale cress | nucleus | 39.73 | 40.47 |
| VIT_03s0091g00690.t01 | Wine grape | nucleus | 43.38 | 40.43 |
| KRH05601 | Soybean | nucleus | 44.29 | 40.42 |
| KRH15443 | Soybean | nucleus | 42.92 | 40.34 |
| KRH52082 | Soybean | nucleus | 42.47 | 39.91 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 42.47 | 39.91 |
| KRH61394 | Soybean | nucleus | 42.47 | 39.91 |
| Bra012914.1-P | Field mustard | nucleus | 38.81 | 39.91 |
| Bra029985.1-P | Field mustard | nucleus | 39.73 | 39.37 |
| CDX83103 | Canola | nucleus | 39.73 | 39.19 |
| CDX68558 | Canola | nucleus | 39.73 | 39.19 |
| CDX68559 | Canola | nucleus | 40.18 | 39.11 |
| Bra022436.1-P | Field mustard | nucleus | 47.49 | 38.95 |
| KRH35675 | Soybean | nucleus | 45.66 | 38.91 |
| AT5G43170.1 | Thale cress | nucleus | 34.25 | 38.86 |
| CDY43576 | Canola | nucleus | 36.99 | 38.76 |
| CDX99202 | Canola | nucleus | 47.03 | 38.72 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 43.38 | 38.46 |
| PGSC0003DMT400055391 | Potato | nucleus | 33.79 | 38.34 |
| CDY18661 | Canola | nucleus | 36.07 | 38.16 |
| CDX95435 | Canola | nucleus | 45.21 | 37.93 |
| CDY46162 | Canola | nucleus | 46.12 | 37.83 |
| KRG91102 | Soybean | nucleus | 44.75 | 37.69 |
| CDX70236 | Canola | nucleus, plastid | 38.81 | 37.28 |
| Bra009464.1-P | Field mustard | plastid | 38.81 | 37.28 |
| CDY51312 | Canola | nucleus | 37.44 | 37.27 |
| CDY42192 | Canola | nucleus | 44.75 | 37.12 |
| Bra038219.1-P | Field mustard | nucleus | 44.75 | 37.12 |
| CDY65161 | Canola | nucleus | 45.21 | 36.94 |
| CDY03945 | Canola | nucleus | 38.81 | 36.8 |
| CDY37851 | Canola | nucleus | 36.07 | 36.74 |
| AT3G19580.1 | Thale cress | nucleus | 45.66 | 36.63 |
| AT1G27730.1 | Thale cress | nucleus | 37.9 | 36.56 |
| Solyc04g077980.1.1 | Tomato | nucleus, plastid | 43.38 | 36.54 |
| CDX82290 | Canola | nucleus | 44.75 | 36.43 |
| CDX84907 | Canola | nucleus | 37.9 | 36.24 |
| Bra001752.1-P | Field mustard | nucleus | 43.84 | 35.96 |
| CDY27629 | Canola | nucleus | 37.44 | 35.81 |
| Bra032845.1-P | Field mustard | nucleus | 37.44 | 35.81 |
| HORVU2Hr1G014870.1 | Barley | nucleus | 35.16 | 35.65 |
| CDY11770 | Canola | nucleus | 37.9 | 35.62 |
| Bra010922.1-P | Field mustard | nucleus | 37.44 | 35.19 |
| CDX90105 | Canola | nucleus | 37.44 | 35.19 |
| Bra037845.1-P | Field mustard | nucleus | 36.99 | 35.06 |
| AT5G04340.1 | Thale cress | nucleus | 36.99 | 34.03 |
| Bra031834.1-P | Field mustard | nucleus | 36.07 | 33.62 |
| PGSC0003DMT400084751 | Potato | nucleus | 40.18 | 33.59 |
| CDY08718 | Canola | nucleus | 36.53 | 33.2 |
| CDY36493 | Canola | nucleus | 36.53 | 33.2 |
| Bra024448.1-P | Field mustard | nucleus | 36.53 | 33.2 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 41.55 | 32.97 |
| AT5G67450.1 | Thale cress | nucleus | 36.53 | 32.65 |
| HORVU5Hr1G097500.3 | Barley | nucleus, plastid | 44.75 | 31.72 |
| PGSC0003DMT400086329 | Potato | nucleus, plastid | 33.33 | 31.6 |
| PGSC0003DMT400040388 | Potato | cytosol | 28.77 | 29.72 |
| PGSC0003DMT400072661 | Potato | nucleus | 34.7 | 29.34 |
| PGSC0003DMT400085102 | Potato | nucleus | 30.14 | 29.33 |
| Solyc01g107170.2.1 | Tomato | nucleus | 41.1 | 29.03 |
| PGSC0003DMT400006126 | Potato | nucleus | 36.53 | 27.78 |
| PGSC0003DMT400095976 | Potato | nucleus | 29.68 | 27.31 |
| HORVU3Hr1G028100.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 23.74 | 26.13 |
| PGSC0003DMT400024799 | Potato | cytosol | 22.83 | 25.64 |
| HORVU2Hr1G097410.1 | Barley | nucleus | 29.68 | 22.11 |
| HORVU0Hr1G030680.1 | Barley | nucleus | 29.22 | 20.45 |
| HORVU6Hr1G063280.1 | Barley | mitochondrion, nucleus, plastid | 29.22 | 20.45 |
| HORVU1Hr1G054170.1 | Barley | nucleus | 28.31 | 18.08 |
| HORVU2Hr1G097440.1 | Barley | mitochondrion | 16.44 | 16.51 |
Protein Annotations
| EMBL:AK361062 | EnsemblPlants:HORVU4Hr1G013460.1 | EnsemblPlantsGene:HORVU4Hr1G013460 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0002006284 | UniProt:F2DAZ8 | MapMan:15.5.15 | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DAZ8]
Coordinates
chrchr4H:+:46972576..46974016
Molecular Weight (calculated)
23262.6 Da
IEP (calculated)
8.621
GRAVY (calculated)
-0.500
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDAVRDAA AAMPSPAVSE EEEELRCAEG WGKRKRPRRQ QQRAPSEEEH LALSLLMLAR GHRDQQILRP SSPAQEHRCS VCGKAFPSYQ ALGGHKASHR
101: PKPAPVAADE PAATTAASPA ASSSTTSSGA GGKVHECSVC NKTFPTGQAL GGHKRRHYEG PIGGGGATAV ASRRFDLNLP ALPDIVVVTE RERCVPVPAD
201: EEEVLSPLAF KKPRLMIPA
101: PKPAPVAADE PAATTAASPA ASSSTTSSGA GGKVHECSVC NKTFPTGQAL GGHKRRHYEG PIGGGGATAV ASRRFDLNLP ALPDIVVVTE RERCVPVPAD
201: EEEVLSPLAF KKPRLMIPA
001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
Arabidopsis Description
At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.