Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc12g088390.1.1 | Tomato | nucleus | 93.16 | 88.5 |
PGSC0003DMT400030168 | Potato | nucleus | 86.32 | 78.47 |
PGSC0003DMT400055391 | Potato | nucleus | 52.11 | 51.3 |
PGSC0003DMT400086329 | Potato | nucleus, plastid | 54.21 | 44.59 |
KRH15443 | Soybean | nucleus | 54.21 | 44.21 |
PGSC0003DMT400072661 | Potato | nucleus | 59.47 | 43.63 |
KRH05601 | Soybean | nucleus | 54.74 | 43.33 |
PGSC0003DMT400040388 | Potato | cytosol | 47.89 | 42.92 |
PGSC0003DMT400085102 | Potato | nucleus | 48.95 | 41.33 |
PGSC0003DMT400095976 | Potato | nucleus | 51.05 | 40.76 |
PGSC0003DMT400006126 | Potato | nucleus | 59.47 | 39.24 |
PGSC0003DMT400024799 | Potato | cytosol | 40.0 | 38.97 |
TraesCS4A01G236000.1 | Wheat | nucleus | 41.58 | 38.73 |
TraesCS4D01G077900.1 | Wheat | nucleus | 43.16 | 37.44 |
HORVU4Hr1G013460.1 | Barley | nucleus | 42.63 | 36.99 |
TraesCS4B01G079000.1 | Wheat | nucleus | 42.11 | 36.36 |
PGSC0003DMT400084751 | Potato | nucleus | 50.0 | 36.26 |
Os12t0583700-00 | Rice | nucleus | 45.26 | 34.82 |
TraesCS5B01G076400.1 | Wheat | nucleus | 43.68 | 34.73 |
TraesCS5D01G082700.1 | Wheat | nucleus | 43.16 | 34.45 |
TraesCS5A01G070600.1 | Wheat | nucleus | 43.68 | 34.44 |
GSMUA_Achr5P08730_001 | Banana | nucleus | 44.21 | 34.01 |
Os03t0610400-01 | Rice | nucleus | 40.53 | 32.35 |
GSMUA_Achr6P24730_001 | Banana | nucleus | 40.0 | 27.54 |
Zm00001d030858_P001 | Maize | nucleus | 40.0 | 27.44 |
EES16240 | Sorghum | nucleus | 41.58 | 27.24 |
PGSC0003DMT400053945 | Potato | cytosol | 21.05 | 26.14 |
PGSC0003DMT400066939 | Potato | nucleus | 34.21 | 19.7 |
PGSC0003DMT400012154 | Potato | nucleus | 27.89 | 17.79 |
PGSC0003DMT400030986 | Potato | nucleus | 27.89 | 17.38 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400091896 | EnsemblPlantsGene:PGSC0003DMG400041467 | EntrezGene:102589957 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 |
PFAM:PF13912 | PFscan:PS50157 | PGSC:PGSC0003DMG400041467 | RefSeq:XP_006342663.1 | ScanProsite:PS00028 | SEG:seg |
SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00029585C7 | UniProt:M1DNM6 | MapMan:15.5.15 | : |
Description
Zinc-finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400041467]
Coordinates
chr12:+:56259433..56260005
Molecular Weight (calculated)
21076.9 Da
IEP (calculated)
9.041
GRAVY (calculated)
-0.598
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEALNSWT KGKIRSKRSR SIVMEEQQSI ITEDEYLALC LLMLARSNNN NNVTSKNLYK CSVCGKCFGS YQALGGHKAS HRSNRDKVYE QSVIITSGNV
101: VSGRTHECTI CHKTFPTGQA LGGHKRRHYE GKVTSSSSSN GVGSVNNFDL NIPVLPDNWP GFASGEDEVE SPHPTKKLRQ FPSLELFQQQ
101: VSGRTHECTI CHKTFPTGQA LGGHKRRHYE GKVTSSSSSN GVGSVNNFDL NIPVLPDNWP GFASGEDEVE SPHPTKKLRQ FPSLELFQQQ
001: MALEALNSPR LVEDPLRFNG VEQWTKCKKR SKRSRSDLHH NHRLTEEEYL AFCLMLLARD GGDLDSVTVA EKPSYKCGVC YKTFSSYQAL GGHKASHRSL
101: YGGGENDKST PSTAVKSHVC SVCGKSFATG QALGGHKRCH YDGGVSNSEG VGSTSHVSSS SHRGFDLNII PVQGFSPDDE VMSPMATKKP RLK
101: YGGGENDKST PSTAVKSHVC SVCGKSFATG QALGGHKRCH YDGGVSNSEG VGSTSHVSSS SHRGFDLNII PVQGFSPDDE VMSPMATKKP RLK
Arabidopsis Description
AZF3Zinc finger protein AZF3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSW0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.