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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g088390.1.1 Tomato nucleus 93.16 88.5
PGSC0003DMT400030168 Potato nucleus 86.32 78.47
PGSC0003DMT400055391 Potato nucleus 52.11 51.3
PGSC0003DMT400086329 Potato nucleus, plastid 54.21 44.59
KRH15443 Soybean nucleus 54.21 44.21
PGSC0003DMT400072661 Potato nucleus 59.47 43.63
KRH05601 Soybean nucleus 54.74 43.33
PGSC0003DMT400040388 Potato cytosol 47.89 42.92
PGSC0003DMT400085102 Potato nucleus 48.95 41.33
PGSC0003DMT400095976 Potato nucleus 51.05 40.76
PGSC0003DMT400006126 Potato nucleus 59.47 39.24
PGSC0003DMT400024799 Potato cytosol 40.0 38.97
TraesCS4A01G236000.1 Wheat nucleus 41.58 38.73
TraesCS4D01G077900.1 Wheat nucleus 43.16 37.44
HORVU4Hr1G013460.1 Barley nucleus 42.63 36.99
TraesCS4B01G079000.1 Wheat nucleus 42.11 36.36
PGSC0003DMT400084751 Potato nucleus 50.0 36.26
Os12t0583700-00 Rice nucleus 45.26 34.82
TraesCS5B01G076400.1 Wheat nucleus 43.68 34.73
TraesCS5D01G082700.1 Wheat nucleus 43.16 34.45
TraesCS5A01G070600.1 Wheat nucleus 43.68 34.44
GSMUA_Achr5P08730_001 Banana nucleus 44.21 34.01
Os03t0610400-01 Rice nucleus 40.53 32.35
GSMUA_Achr6P24730_001 Banana nucleus 40.0 27.54
Zm00001d030858_P001 Maize nucleus 40.0 27.44
EES16240 Sorghum nucleus 41.58 27.24
PGSC0003DMT400053945 Potato cytosol 21.05 26.14
PGSC0003DMT400066939 Potato nucleus 34.21 19.7
PGSC0003DMT400012154 Potato nucleus 27.89 17.79
PGSC0003DMT400030986 Potato nucleus 27.89 17.38
Protein Annotations
EnsemblPlants:PGSC0003DMT400091896EnsemblPlantsGene:PGSC0003DMG400041467EntrezGene:102589957Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typePANTHER:PTHR26374PANTHER:PTHR26374:SF263
PFAM:PF13912PFscan:PS50157PGSC:PGSC0003DMG400041467RefSeq:XP_006342663.1ScanProsite:PS00028SEG:seg
SMART:SM00355SUPFAM:SSF57667UniParc:UPI00029585C7UniProt:M1DNM6MapMan:15.5.15:
Description
Zinc-finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400041467]
Coordinates
chr12:+:56259433..56260005
Molecular Weight (calculated)
21076.9 Da
IEP (calculated)
9.041
GRAVY (calculated)
-0.598
Length
190 amino acids
Sequence
(BLAST)
001: MALEALNSWT KGKIRSKRSR SIVMEEQQSI ITEDEYLALC LLMLARSNNN NNVTSKNLYK CSVCGKCFGS YQALGGHKAS HRSNRDKVYE QSVIITSGNV
101: VSGRTHECTI CHKTFPTGQA LGGHKRRHYE GKVTSSSSSN GVGSVNNFDL NIPVLPDNWP GFASGEDEVE SPHPTKKLRQ FPSLELFQQQ
Best Arabidopsis Sequence Match ( AT5G43170.1 )
(BLAST)
001: MALEALNSPR LVEDPLRFNG VEQWTKCKKR SKRSRSDLHH NHRLTEEEYL AFCLMLLARD GGDLDSVTVA EKPSYKCGVC YKTFSSYQAL GGHKASHRSL
101: YGGGENDKST PSTAVKSHVC SVCGKSFATG QALGGHKRCH YDGGVSNSEG VGSTSHVSSS SHRGFDLNII PVQGFSPDDE VMSPMATKKP RLK
Arabidopsis Description
AZF3Zinc finger protein AZF3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSW0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.