Factsheet for PGSC0003DMT400085102

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400095976	Potato	nucleus	91.56	86.55
PGSC0003DMT400024799	Potato	cytosol	74.22	85.64
PGSC0003DMT400040388	Potato	cytosol	78.67	83.49
PGSC0003DMT400055391	Potato	nucleus	67.11	78.24
PGSC0003DMT400072661	Potato	nucleus	85.33	74.13
PGSC0003DMT400086329	Potato	nucleus, plastid	75.11	73.16
PGSC0003DMT400006126	Potato	nucleus	91.56	71.53
Solyc04g077980.1.1	Tomato	nucleus, plastid	70.22	60.77
PGSC0003DMT400091896	Potato	nucleus	41.33	48.95
PGSC0003DMT400030168	Potato	nucleus	39.56	42.58
KRH15443	Soybean	nucleus	39.56	38.2
KRH05601	Soybean	nucleus	40.0	37.5
TraesCS4A01G236000.1	Wheat	nucleus	31.11	34.31
TraesCS4D01G077900.1	Wheat	nucleus	30.22	31.05
TraesCS4B01G079000.1	Wheat	nucleus	30.22	30.91
HORVU4Hr1G013460.1	Barley	nucleus	29.33	30.14
TraesCS5B01G076400.1	Wheat	nucleus	31.56	29.71
GSMUA_Achr5P08730_001	Banana	nucleus	32.44	29.55
Os12t0583700-00	Rice	nucleus	32.44	29.55
TraesCS5D01G082700.1	Wheat	nucleus	31.11	29.41
TraesCS5A01G070600.1	Wheat	nucleus	31.11	29.05
PGSC0003DMT400084751	Potato	nucleus	32.89	28.24
Os03t0610400-01	Rice	nucleus	28.44	26.89
GSMUA_Achr6P24730_001	Banana	nucleus	32.0	26.09
PGSC0003DMT400053945	Potato	cytosol	17.33	25.49
Zm00001d030858_P001	Maize	nucleus	29.78	24.19
EES16240	Sorghum	nucleus	28.0	21.72
PGSC0003DMT400030986	Potato	nucleus	21.33	15.74
PGSC0003DMT400066939	Potato	nucleus	22.67	15.45
PGSC0003DMT400012154	Potato	nucleus	20.0	15.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400085102	EnsemblPlantsGene:PGSC0003DMG400034673	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF263	PFAM:PF13912
PFscan:PS50157	PGSC:PGSC0003DMG400034673	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000294C105	UniProt:M1D8R8	MapMan:15.5.15	:	:	:

Description

Cys2-His2 type zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400034673]

Coordinates

chr11:+:740025..740840

Molecular Weight (calculated)

24298.4 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.591

Length

225 amino acids

Sequence
(BLAST)

001: MDRQPTEEEY LALCLIMLAR SDGSANQVRS LPPPVPVMKI HTPSEKIEEK MLYKCSVCGK GFGSYQALGG HKTTHQKLIA GGGGGDDQST TSTTTNATGT
101: TSSGNGNRSG RTHECLICHK CFPTGQALGG HKRCHYDGDN ANSSVSTSVG VTSEEDVGST ISHPDFDLNI PVLPEFCPGF GSGEDEREMS RVGVELMEIE
201: KEVTEEMRDG DDEVKRIWNR VGMDL

Best Arabidopsis Sequence Match ( AT1G27730.1 )
(BLAST)

001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL

Arabidopsis Description

ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.