Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G079000.1 | Wheat | nucleus | 92.24 | 91.82 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 84.93 | 91.18 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 84.02 | 84.02 |
| Os03t0610400-01 | Rice | nucleus | 68.95 | 63.45 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 58.45 | 53.78 |
| CDY02102 | Canola | nucleus | 33.33 | 46.2 |
| CDY23027 | Canola | nucleus | 33.79 | 43.53 |
| CDY22361 | Canola | nucleus | 36.53 | 43.24 |
| PGSC0003DMT400091896 | Potato | nucleus | 37.44 | 43.16 |
| Bra033666.1-P | Field mustard | nucleus | 35.62 | 42.16 |
| CDX81313 | Canola | nucleus | 35.62 | 41.94 |
| VIT_18s0001g09230.t01 | Wine grape | nucleus | 44.29 | 41.63 |
| VIT_03s0091g00690.t01 | Wine grape | nucleus | 44.29 | 41.28 |
| CDY30794 | Canola | nucleus | 35.62 | 41.27 |
| KRH15443 | Soybean | nucleus | 43.84 | 41.2 |
| PGSC0003DMT400030168 | Potato | nucleus | 39.27 | 41.15 |
| AT3G49930.1 | Thale cress | nucleus | 40.18 | 40.93 |
| Bra012914.1-P | Field mustard | nucleus | 39.73 | 40.85 |
| KRH05601 | Soybean | nucleus | 44.75 | 40.83 |
| Bra029985.1-P | Field mustard | nucleus | 41.1 | 40.72 |
| CDX83103 | Canola | nucleus | 41.1 | 40.54 |
| Solyc12g088390.1.1 | Tomato | nucleus | 36.99 | 40.5 |
| AT5G43170.1 | Thale cress | nucleus | 35.62 | 40.41 |
| CDX68558 | Canola | nucleus | 40.64 | 40.09 |
| CDX68559 | Canola | nucleus | 41.1 | 40.0 |
| KRH52082 | Soybean | nucleus | 42.47 | 39.91 |
| KRH61394 | Soybean | nucleus | 42.47 | 39.91 |
| TraesCS7D01G161800.1 | Wheat | nucleus | 37.44 | 39.42 |
| PGSC0003DMT400055391 | Potato | nucleus | 34.25 | 38.86 |
| CDY43576 | Canola | nucleus | 36.99 | 38.76 |
| CDY18661 | Canola | nucleus | 36.53 | 38.65 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 43.38 | 38.46 |
| CDX84907 | Canola | nucleus | 40.18 | 38.43 |
| AT1G27730.1 | Thale cress | nucleus | 39.73 | 38.33 |
| KRH35675 | Soybean | nucleus | 44.75 | 38.13 |
| TraesCS2D01G193900.1 | Wheat | nucleus | 37.9 | 38.07 |
| CDY27629 | Canola | nucleus | 39.73 | 37.99 |
| Bra032845.1-P | Field mustard | nucleus | 39.73 | 37.99 |
| Bra022436.1-P | Field mustard | nucleus | 46.12 | 37.83 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 40.18 | 37.77 |
| CDX99202 | Canola | nucleus | 45.66 | 37.59 |
| Bra010922.1-P | Field mustard | nucleus | 39.73 | 37.34 |
| CDX90105 | Canola | nucleus | 39.73 | 37.34 |
| CDY11770 | Canola | nucleus | 39.73 | 37.34 |
| CDY51312 | Canola | nucleus | 37.44 | 37.27 |
| CDY03945 | Canola | nucleus | 39.27 | 37.23 |
| KRG91102 | Soybean | nucleus | 43.84 | 36.92 |
| Bra009464.1-P | Field mustard | plastid | 38.36 | 36.84 |
| CDX70236 | Canola | nucleus, plastid | 38.36 | 36.84 |
| CDX95435 | Canola | nucleus | 43.84 | 36.78 |
| CDY37851 | Canola | nucleus | 36.07 | 36.74 |
| CDY46162 | Canola | nucleus | 44.75 | 36.7 |
| Solyc04g077980.1.1 | Tomato | nucleus, plastid | 43.38 | 36.54 |
| TraesCS2D01G088100.1 | Wheat | nucleus | 32.42 | 36.22 |
| Bra038219.1-P | Field mustard | nucleus | 43.38 | 35.98 |
| CDY42192 | Canola | nucleus | 43.38 | 35.98 |
| CDY65161 | Canola | nucleus | 43.38 | 35.45 |
| AT5G04340.1 | Thale cress | nucleus | 38.36 | 35.29 |
| Bra001752.1-P | Field mustard | nucleus | 42.92 | 35.21 |
| AT3G19580.1 | Thale cress | nucleus | 43.84 | 35.16 |
| Bra037845.1-P | Field mustard | nucleus | 36.99 | 35.06 |
| CDX82290 | Canola | nucleus | 42.92 | 34.94 |
| Bra031834.1-P | Field mustard | nucleus | 36.07 | 33.62 |
| PGSC0003DMT400086329 | Potato | nucleus, plastid | 35.16 | 33.33 |
| Bra024448.1-P | Field mustard | nucleus | 36.53 | 33.2 |
| CDY08718 | Canola | nucleus | 36.53 | 33.2 |
| CDY36493 | Canola | nucleus | 36.07 | 32.78 |
| AT5G67450.1 | Thale cress | nucleus | 36.53 | 32.65 |
| PGSC0003DMT400084751 | Potato | nucleus | 38.81 | 32.44 |
| PGSC0003DMT400040388 | Potato | cytosol | 30.59 | 31.6 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 38.36 | 30.43 |
| PGSC0003DMT400085102 | Potato | nucleus | 31.05 | 30.22 |
| PGSC0003DMT400072661 | Potato | nucleus | 35.62 | 30.12 |
| TraesCS5D01G411400.1 | Wheat | nucleus | 44.75 | 29.43 |
| PGSC0003DMT400006126 | Potato | nucleus | 37.44 | 28.47 |
| PGSC0003DMT400095976 | Potato | nucleus | 30.59 | 28.15 |
| Solyc01g107170.2.1 | Tomato | nucleus | 38.81 | 27.42 |
| PGSC0003DMT400024799 | Potato | cytosol | 23.29 | 26.15 |
| TraesCS2D01G410300.1 | Wheat | nucleus | 29.68 | 21.17 |
| TraesCS6D01G230800.1 | Wheat | nucleus | 30.14 | 20.95 |
| TraesCS1D01G214900.1 | Wheat | nucleus | 31.05 | 19.94 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G077900.1 | EnsemblPlantsGene:TraesCS4D01G077900 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr4D:+:52215219..52215878
Molecular Weight (calculated)
23538.9 Da
IEP (calculated)
8.412
GRAVY (calculated)
-0.587
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDAVRDVS AMPSPAVSEE EEGQLRCDEG WGKRRRPRRQ RQRAPSEEEH LALSLLMLAR GHRDRHLLGP SEPAQEHWCS VCGKGFPSYQ ALGGHKASHR
101: PKPAPAGADE PAATAAASST TSSGAGGGGK VHECSVCKKT FPTGQALGGH KRCHYEGPIG ASAVASRGFD LNLPALPDIV TERERCMPAP ADEEEVLSPL
201: AFKKPRLMIP VCAARRYYQ
101: PKPAPAGADE PAATAAASST TSSGAGGGGK VHECSVCKKT FPTGQALGGH KRCHYEGPIG ASAVASRGFD LNLPALPDIV TERERCMPAP ADEEEVLSPL
201: AFKKPRLMIP VCAARRYYQ
001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
Arabidopsis Description
At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.