Factsheet for VIT_18s0001g09230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00690.t01	Wine grape	nucleus	66.95	66.38
VIT_07s0129g00240.t01	Wine grape	nucleus	55.36	55.36
KRH35675	Soybean	nucleus	55.36	50.19
KRG91102	Soybean	nucleus	55.36	49.62
TraesCS4A01G236000.1	Wheat	nucleus	40.77	46.57
TraesCS4B01G079000.1	Wheat	nucleus	42.06	44.55
TraesCS4D01G077900.1	Wheat	nucleus	41.63	44.29
HORVU4Hr1G013460.1	Barley	nucleus	40.77	43.38
Os12t0583700-00	Rice	nucleus	44.21	41.7
TraesCS5B01G076400.1	Wheat	nucleus	42.06	41.0
TraesCS5D01G082700.1	Wheat	nucleus	41.63	40.76
TraesCS5A01G070600.1	Wheat	nucleus	42.06	40.66
Os03t0610400-01	Rice	nucleus	40.77	39.92
GSMUA_Achr5P08730_001	Banana	nucleus	41.63	39.27
Zm00001d030858_P001	Maize	nucleus	39.91	33.57
GSMUA_Achr6P24730_001	Banana	nucleus	39.06	32.97
EES16240	Sorghum	nucleus	38.63	31.03
VIT_15s0021g02720.t01	Wine grape	nucleus	32.19	20.89
VIT_00s0229g00050.t01	Wine grape	nucleus	22.75	16.41

Protein Annotations

EntrezGene:100250659	wikigene:100250659	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:AM460588	ProteinID:CAN61394
ProteinID:CAN61394.1	ProteinID:CCB45760	ProteinID:CCB45760.1	UniProt:F6GZM8	EMBL:FN595227	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008150	GO:GO:0009719	GO:GO:0010200	InterPro:IPR013087	EntrezGene:LOC100250659	wikigene:LOC100250659
PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF319	SMART:SM00355
SUPFAM:SSF57667	TIGR:TC55668	TIGR:TC60752	UniParc:UPI000198537C	ArrayExpress:VIT_18s0001g09230	EnsemblPlantsGene:VIT_18s0001g09230
EnsemblPlants:VIT_18s0001g09230.t01	unigene:Vvi.8755	RefSeq:XP_002285260	RefSeq:XP_002285260.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:7732627..7733603

Molecular Weight (calculated)

25292.7 Da

IEP (calculated)

8.820

GRAVY (calculated)

-0.605

Length

233 amino acids

Sequence
(BLAST)

001: MALEALNSPT TPTPSFHYEQ PSLHSLESWA KRKRSKRPRF DNQPTEEEYL ALCLIMLARG GAAASTVSHR RHLSPPPALQ VEAPKLTYKC SVCNKAFASY
101: QALGGHKASH RKQSGSDDLS ASITTTSTAA AASGGRTHEC SICHKTFPTG QALGGHKRCH YEGGASVSSG VTSSEGVGST HSHRDFDLNL PAFPELWSAR
201: RFPVDDEVES PLPTKKPRLQ MLPPKTEVSL DHH

Best Arabidopsis Sequence Match ( AT1G27730.1 )
(BLAST)

001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL

Arabidopsis Description

ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.