Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G079000.1 | Wheat | nucleus | 67.65 | 73.18 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 62.18 | 72.55 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 65.97 | 71.69 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 63.45 | 68.95 |
| Os12t0583700-00 | Rice | nucleus | 53.36 | 51.42 |
| CDY02102 | Canola | nucleus | 31.09 | 46.84 |
| CDY23027 | Canola | nucleus | 31.51 | 44.12 |
| CDY22361 | Canola | nucleus | 34.03 | 43.78 |
| CDX81313 | Canola | nucleus | 33.61 | 43.01 |
| CDY30794 | Canola | nucleus | 33.61 | 42.33 |
| Bra033666.1-P | Field mustard | nucleus | 32.77 | 42.16 |
| Os03t0764100-01 | Rice | nucleus | 47.06 | 41.64 |
| KRH15443 | Soybean | nucleus | 40.76 | 41.63 |
| AT5G43170.1 | Thale cress | nucleus | 33.19 | 40.93 |
| AT3G49930.1 | Thale cress | nucleus | 36.97 | 40.93 |
| VIT_18s0001g09230.t01 | Wine grape | nucleus | 39.92 | 40.77 |
| Bra029985.1-P | Field mustard | nucleus | 37.82 | 40.72 |
| CDY43576 | Canola | nucleus | 35.71 | 40.67 |
| CDX68558 | Canola | nucleus | 37.82 | 40.54 |
| CDX83103 | Canola | nucleus | 37.82 | 40.54 |
| PGSC0003DMT400091896 | Potato | nucleus | 32.35 | 40.53 |
| CDX68559 | Canola | nucleus | 38.24 | 40.44 |
| KRH05601 | Soybean | nucleus | 40.76 | 40.42 |
| Bra012914.1-P | Field mustard | nucleus | 36.13 | 40.38 |
| VIT_03s0091g00690.t01 | Wine grape | nucleus | 39.5 | 40.0 |
| KRH61394 | Soybean | nucleus | 39.08 | 39.91 |
| KRH52082 | Soybean | nucleus | 38.66 | 39.48 |
| PGSC0003DMT400030168 | Potato | nucleus | 34.45 | 39.23 |
| CDY18661 | Canola | nucleus | 34.03 | 39.13 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 40.34 | 38.87 |
| CDY51312 | Canola | nucleus | 35.71 | 38.64 |
| CDY37851 | Canola | nucleus | 34.87 | 38.6 |
| CDX70236 | Canola | nucleus, plastid | 36.97 | 38.6 |
| Bra009464.1-P | Field mustard | plastid | 36.97 | 38.6 |
| Solyc12g088390.1.1 | Tomato | nucleus | 32.35 | 38.5 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 37.4 | 38.2 |
| CDX84907 | Canola | nucleus | 36.13 | 37.55 |
| CDY03945 | Canola | nucleus | 36.13 | 37.23 |
| CDY27629 | Canola | nucleus | 35.71 | 37.12 |
| Bra032845.1-P | Field mustard | nucleus | 35.71 | 37.12 |
| AT1G27730.1 | Thale cress | nucleus | 35.29 | 37.0 |
| PGSC0003DMT400055391 | Potato | nucleus | 29.83 | 36.79 |
| Bra022436.1-P | Field mustard | nucleus | 41.18 | 36.7 |
| CDX99202 | Canola | nucleus | 40.76 | 36.47 |
| KRH35675 | Soybean | nucleus | 39.08 | 36.19 |
| AT5G04340.1 | Thale cress | nucleus | 36.13 | 36.13 |
| Bra010922.1-P | Field mustard | nucleus | 35.29 | 36.05 |
| CDY11770 | Canola | nucleus | 35.29 | 36.05 |
| CDX90105 | Canola | nucleus | 35.29 | 36.05 |
| CDY46162 | Canola | nucleus | 40.34 | 35.96 |
| Solyc04g077980.1.1 | Tomato | nucleus, plastid | 39.08 | 35.77 |
| Os03t0437100-01 | Rice | nucleus | 29.83 | 35.5 |
| Os11t0340477-01 | Rice | nucleus | 29.83 | 35.5 |
| Bra037845.1-P | Field mustard | nucleus | 34.45 | 35.5 |
| Bra031834.1-P | Field mustard | nucleus | 34.87 | 35.32 |
| CDX95435 | Canola | nucleus | 38.66 | 35.25 |
| CDY65161 | Canola | nucleus | 39.5 | 35.07 |
| KRG91102 | Soybean | nucleus | 38.24 | 35.0 |
| Bra038219.1-P | Field mustard | nucleus | 38.66 | 34.85 |
| CDX82290 | Canola | nucleus | 39.08 | 34.57 |
| CDY42192 | Canola | nucleus | 38.24 | 34.47 |
| Bra001752.1-P | Field mustard | nucleus | 38.66 | 34.46 |
| AT3G19580.1 | Thale cress | nucleus | 39.5 | 34.43 |
| Bra024448.1-P | Field mustard | nucleus | 34.45 | 34.02 |
| CDY08718 | Canola | nucleus | 34.45 | 34.02 |
| AT5G67450.1 | Thale cress | nucleus | 34.87 | 33.88 |
| CDY36493 | Canola | nucleus | 34.03 | 33.61 |
| Os08t0300366-00 | Rice | cytosol, nucleus, plastid | 19.33 | 32.39 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 37.4 | 32.25 |
| Os07t0590100-01 | Rice | cytosol, nucleus | 26.89 | 31.68 |
| PGSC0003DMT400084751 | Potato | nucleus | 34.87 | 31.68 |
| PGSC0003DMT400086329 | Potato | nucleus, plastid | 30.67 | 31.6 |
| Os03t0437200-01 | Rice | cytosol, nucleus, vacuole | 28.57 | 30.91 |
| PGSC0003DMT400072661 | Potato | nucleus | 31.09 | 28.57 |
| PGSC0003DMT400085102 | Potato | nucleus | 26.89 | 28.44 |
| PGSC0003DMT400040388 | Potato | cytosol | 25.21 | 28.3 |
| Solyc01g107170.2.1 | Tomato | nucleus | 35.29 | 27.1 |
| PGSC0003DMT400006126 | Potato | nucleus | 32.77 | 27.08 |
| PGSC0003DMT400095976 | Potato | nucleus | 26.89 | 26.89 |
| Os07t0209600-00 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 32.77 | 26.35 |
| PGSC0003DMT400024799 | Potato | cytosol | 19.33 | 23.59 |
| Os02t0659500-01 | Rice | mitochondrion | 25.21 | 17.6 |
| Os10t0555300-01 | Rice | mitochondrion, nucleus | 26.47 | 17.55 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:4333432 | ProteinID:AAR00591.1 | ProteinID:AAR87353.1 | ProteinID:ABF97574.1 | EMBL:AY289189 |
| EMBL:AY305868 | ProteinID:BAF12564.1 | ProteinID:BAS85251.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 | EnsemblPlantsGene:Os03g0610400 |
| EnsemblPlants:Os03t0610400-01 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 |
| UniProt:Q7X850 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000019C395 | RefSeq:XP_015629276.1 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
Zinc finger, C2H2-like domain containing protein. (Os03t0610400-01)
Coordinates
chr3:-:23036335..23037381
Molecular Weight (calculated)
24593.1 Da
IEP (calculated)
8.711
GRAVY (calculated)
-0.455
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVEEVLDGA APMLSSSPAA SGEEVGARKP QQRCGGAEGW SKRKRSRRRH RDRAAAPPPH GSEEEHLALS LLMLARGHRD PSPAPQEQHG CSVCGRVFSS
101: YQALGGHKTS HRPRTPPTMA AVVVVDEPAA TTASPAASSS NSGSGSGGGG GNKVHECSVC KKTFPTGQAL GGHKRCHYEG PIGSGGGAAV AGRGFDLNLP
201: AVALPDIMTE RCLPAAAEEE EVLSPLASFK KPRLMIPA
101: YQALGGHKTS HRPRTPPTMA AVVVVDEPAA TTASPAASSS NSGSGSGGGG GNKVHECSVC KKTFPTGQAL GGHKRCHYEG PIGSGGGAAV AGRGFDLNLP
201: AVALPDIMTE RCLPAAAEEE EVLSPLASFK KPRLMIPA
001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
Arabidopsis Description
At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.