Factsheet for Bra040741.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53641	Canola	nucleus	100.0	100.0
CDY50848	Canola	nucleus	97.13	97.13
Bra012701.1-P	Field mustard	nucleus, plastid	86.12	84.11
AT4G16610.1	Thale cress	nucleus	79.43	81.37
Bra038491.1-P	Field mustard	nucleus	72.73	39.07
KRH57408	Soybean	nucleus	44.02	34.72
KRH04135	Soybean	nucleus	43.06	34.22
VIT_00s0229g00050.t01	Wine grape	nucleus	45.93	29.72
KRH28087	Soybean	nucleus	40.19	29.17
GSMUA_Achr4P26920_001	Banana	mitochondrion	36.84	28.21
GSMUA_Achr2P18480_001	Banana	nucleus	33.01	28.16
KRH77360	Soybean	nucleus	39.71	27.85
Bra040325.1-P	Field mustard	nucleus	36.36	27.05
Bra003422.1-P	Field mustard	nucleus	38.28	26.94
Bra007545.1-P	Field mustard	nucleus	38.28	26.94
HORVU2Hr1G097440.1	Barley	mitochondrion	27.27	26.15
PGSC0003DMT400030986	Potato	nucleus	37.8	25.9
Solyc06g060740.1.1	Tomato	nucleus	37.8	25.82
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	28.23	25.65
GSMUA_Achr5P15450_001	Banana	mitochondrion	33.01	24.91
PGSC0003DMT400012154	Potato	nucleus	35.41	24.83
GSMUA_Achr4P12160_001	Banana	mitochondrion	22.49	24.1
HORVU6Hr1G063280.1	Barley	mitochondrion, nucleus, plastid	35.89	23.96
HORVU0Hr1G030680.1	Barley	nucleus	35.89	23.96
TraesCS6A01G248700.1	Wheat	nucleus	35.89	23.89
TraesCS6B01G276100.1	Wheat	nucleus	35.89	23.89
HORVU2Hr1G097410.1	Barley	nucleus	33.49	23.81
TraesCS6D01G230800.1	Wheat	nucleus	35.41	23.49
TraesCS2A01G413100.1	Wheat	nucleus	33.01	23.47
GSMUA_AchrUn_...	Banana	nucleus	25.36	23.25
Solyc08g078590.1.1	Tomato	nucleus	31.1	23.13
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	32.54	22.97
GSMUA_Achr1P24150_001	Banana	mitochondrion	29.19	22.93
Zm00001d002731_P001	Maize	nucleus	33.49	22.8
GSMUA_Achr1P01550_001	Banana	nucleus	32.06	22.79
Bra000372.1-P	Field mustard	mitochondrion, nucleus	33.49	22.58
TraesCS2D01G410300.1	Wheat	nucleus	32.54	22.15
TraesCS2B01G431800.1	Wheat	nucleus	32.54	22.01
OQU85696	Sorghum	mitochondrion	35.41	21.96
EES11238	Sorghum	mitochondrion	34.45	21.62
Bra014483.1-P	Field mustard	nucleus	26.32	21.57
Zm00001d017497_P001	Maize	mitochondrion	32.06	21.2
TraesCS1A01G211800.1	Wheat	nucleus	33.49	20.96
Os10t0555300-01	Rice	mitochondrion, nucleus	35.89	20.89
Zm00001d047102_P001	Maize	nucleus	33.01	20.29
TraesCS1B01G225500.1	Wheat	nucleus	33.01	20.23
TraesCS1D01G214900.1	Wheat	nucleus	33.01	20.23
Zm00001d029917_P001	Maize	nucleus	33.01	20.23
Os02t0659500-01	Rice	mitochondrion	33.01	20.23
HORVU1Hr1G054170.1	Barley	nucleus	33.01	20.12
Zm00001d051371_P001	Maize	mitochondrion	32.54	20.06
GSMUA_Achr4P05560_001	Banana	nucleus	21.05	19.13
Bra033666.1-P	Field mustard	nucleus	16.27	18.38
EER91950	Sorghum	mitochondrion, plastid	32.06	17.36
Bra012914.1-P	Field mustard	nucleus	15.31	15.02
Bra010922.1-P	Field mustard	nucleus	16.27	14.59
GSMUA_AchrUn_...	Banana	mitochondrion	25.36	14.36
Bra012953.1-P	Field mustard	plastid	18.66	14.18
Bra009464.1-P	Field mustard	plastid	15.31	14.04
Bra029985.1-P	Field mustard	nucleus	14.83	14.03
Bra001752.1-P	Field mustard	nucleus	17.7	13.86
Bra031834.1-P	Field mustard	nucleus	15.31	13.62
GSMUA_Achr7P04600_001	Banana	nucleus	23.45	13.57
Bra032845.1-P	Field mustard	nucleus	14.83	13.54
Bra037845.1-P	Field mustard	nucleus	14.83	13.42
Bra022436.1-P	Field mustard	nucleus	16.75	13.11
Bra038219.1-P	Field mustard	nucleus	16.27	12.88
Bra024448.1-P	Field mustard	nucleus	14.83	12.86
Bra018817.1-P	Field mustard	nucleus	14.83	8.31
Bra029315.1-P	Field mustard	nucleus	8.61	7.73

Protein Annotations

EnsemblPlants:Bra040741.1	EnsemblPlants:Bra040741.1-P	EnsemblPlantsGene:Bra040741	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185	PFAM:PF13912	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	UniParc:UPI000253E864	UniProt:M4FI12	MapMan:35.2	:

Description

AT4G16610 (E=7e-079) | zinc finger (C2H2 type) family protein

Coordinates

chrScaffold000247:-:17147..17776

Molecular Weight (calculated)

23375.8 Da

IEP (calculated)

10.159

GRAVY (calculated)

-0.891

Length

209 amino acids

Sequence
(BLAST)

001: MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HTPTRKKLGD SVYSSSSSSS DGKTLVYGLR ENPRKSLRVF NPDPESSTVY NSETETEPES VDPVRKRSRA
101: EVSKKTKTKK RSKKRVFESG KKQKTSRVNS NESQEPASSV SDGSPEQDLA MCLMMLSRDT REIELKKHVL AAEETKPEKI HFPELRRCVI DLNLPPPQES
201: DIVTVVSAI

Best Arabidopsis Sequence Match ( AT4G16610.1 )
(BLAST)

001: MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSARKKLG DSVYSSSSSS SDGKALAYGL RENPRKSFRV FNPDPESSTI YNSETETEPE SGDPVKKRVR
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:O23504]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.