Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53641 | Canola | nucleus | 81.37 | 79.43 |
| Bra040741.1-P | Field mustard | nucleus | 81.37 | 79.43 |
| CDY50848 | Canola | nucleus | 81.37 | 79.43 |
| CDY69391 | Canola | nucleus | 82.84 | 78.97 |
| CDY32274 | Canola | nucleus | 75.0 | 77.67 |
| Bra012701.1-P | Field mustard | nucleus, plastid | 81.37 | 77.57 |
| CDY09671 | Canola | nucleus | 75.98 | 77.5 |
| CDY40527 | Canola | nucleus | 73.04 | 76.8 |
| Bra038491.1-P | Field mustard | nucleus | 70.59 | 37.02 |
| KRH57408 | Soybean | nucleus | 43.14 | 33.21 |
| KRH04135 | Soybean | nucleus | 40.69 | 31.56 |
| KRH28087 | Soybean | nucleus | 40.69 | 28.82 |
| GSMUA_Achr4P26920_001 | Banana | mitochondrion | 38.24 | 28.57 |
| VIT_00s0229g00050.t01 | Wine grape | nucleus | 44.61 | 28.17 |
| KRH77360 | Soybean | nucleus | 40.2 | 27.52 |
| GSMUA_Achr2P18480_001 | Banana | nucleus | 32.84 | 27.35 |
| HORVU2Hr1G097440.1 | Barley | mitochondrion | 28.43 | 26.61 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 29.9 | 26.52 |
| AT1G02030.1 | Thale cress | nucleus | 34.31 | 26.22 |
| PGSC0003DMT400030986 | Potato | nucleus | 37.75 | 25.25 |
| Solyc06g060740.1.1 | Tomato | nucleus | 37.75 | 25.16 |
| GSMUA_Achr5P15450_001 | Banana | mitochondrion | 33.82 | 24.91 |
| PGSC0003DMT400012154 | Potato | nucleus | 36.27 | 24.83 |
| AT3G60580.1 | Thale cress | nucleus | 34.31 | 24.31 |
| TraesCS6D01G230800.1 | Wheat | nucleus | 36.76 | 23.81 |
| HORVU2Hr1G097410.1 | Barley | nucleus | 34.31 | 23.81 |
| HORVU6Hr1G063280.1 | Barley | mitochondrion, nucleus, plastid | 36.27 | 23.64 |
| HORVU0Hr1G030680.1 | Barley | nucleus | 36.27 | 23.64 |
| TraesCS6B01G276100.1 | Wheat | nucleus | 36.27 | 23.57 |
| TraesCS6A01G248700.1 | Wheat | nucleus | 36.27 | 23.57 |
| Solyc08g078590.1.1 | Tomato | nucleus | 32.35 | 23.49 |
| TraesCS2A01G413100.1 | Wheat | nucleus | 33.82 | 23.47 |
| GSMUA_Achr1P01550_001 | Banana | nucleus | 33.82 | 23.47 |
| GSMUA_Achr4P12160_001 | Banana | mitochondrion | 22.06 | 23.08 |
| GSMUA_Achr5P13370_001 | Banana | mitochondrion, nucleus | 32.84 | 22.64 |
| Zm00001d002731_P001 | Maize | nucleus | 33.82 | 22.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.0 | 22.37 |
| OQU85696 | Sorghum | mitochondrion | 36.76 | 22.26 |
| GSMUA_Achr1P24150_001 | Banana | mitochondrion | 28.92 | 22.18 |
| TraesCS2D01G410300.1 | Wheat | nucleus | 33.33 | 22.15 |
| TraesCS2B01G431800.1 | Wheat | nucleus | 33.33 | 22.01 |
| Zm00001d017497_P001 | Maize | mitochondrion | 33.82 | 21.84 |
| EES11238 | Sorghum | mitochondrion | 34.8 | 21.32 |
| AT2G45120.1 | Thale cress | nucleus | 32.35 | 21.02 |
| TraesCS1A01G211800.1 | Wheat | nucleus | 33.82 | 20.66 |
| Zm00001d051371_P001 | Maize | mitochondrion | 34.31 | 20.65 |
| Os10t0555300-01 | Rice | mitochondrion, nucleus | 36.27 | 20.61 |
| Zm00001d047102_P001 | Maize | nucleus | 33.82 | 20.29 |
| Os02t0659500-01 | Rice | mitochondrion | 33.82 | 20.23 |
| TraesCS1B01G225500.1 | Wheat | nucleus | 33.33 | 19.94 |
| TraesCS1D01G214900.1 | Wheat | nucleus | 33.33 | 19.94 |
| Zm00001d029917_P001 | Maize | nucleus | 33.33 | 19.94 |
| HORVU1Hr1G054170.1 | Barley | nucleus | 33.33 | 19.83 |
| GSMUA_Achr4P05560_001 | Banana | nucleus | 21.08 | 18.7 |
| EER91950 | Sorghum | mitochondrion, plastid | 31.86 | 16.84 |
| AT3G49930.1 | Thale cress | nucleus | 15.2 | 14.42 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 25.0 | 13.82 |
| AT1G27730.1 | Thale cress | nucleus | 15.2 | 13.66 |
| AT5G43170.1 | Thale cress | nucleus | 12.75 | 13.47 |
| GSMUA_Achr7P04600_001 | Banana | nucleus | 23.53 | 13.3 |
| AT5G04340.1 | Thale cress | nucleus | 15.2 | 13.03 |
| AT5G61470.1 | Thale cress | nucleus | 18.63 | 12.5 |
| AT3G19580.1 | Thale cress | nucleus | 16.18 | 12.09 |
| AT5G67450.1 | Thale cress | nucleus | 13.73 | 11.43 |
| AT1G49900.1 | Thale cress | nucleus | 15.69 | 3.49 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827362 | ProteinID:AEE83776.1 | ArrayExpress:AT4G16610 | EnsemblPlantsGene:AT4G16610 | RefSeq:AT4G16610 |
| TAIR:AT4G16610 | RefSeq:AT4G16610-TAIR-G | EnsemblPlants:AT4G16610.1 | TAIR:AT4G16610.1 | EMBL:BT004186 | EMBL:BT005392 |
| ProteinID:CAB10436.1 | ProteinID:CAB78703.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR013087 | RefSeq:NP_193394.1 | UniProt:O23504 | PFAM:PF13912 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | ScanProsite:PS00028 | PFscan:PS50157 |
| PANTHER:PTHR26374 | PANTHER:PTHR26374:SF185 | SUPFAM:SSF57667 | UniParc:UPI000000C2CE | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:O23504]
Coordinates
chr4:-:9354241..9355326
Molecular Weight (calculated)
22838.2 Da
IEP (calculated)
10.197
GRAVY (calculated)
-1.003
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSARKKLG DSVYSSSSSS SDGKALAYGL RENPRKSFRV FNPDPESSTI YNSETETEPE SGDPVKKRVR
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.