Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02142 | Canola | nucleus | 47.7 | 53.31 |
| Bra012953.1-P | Field mustard | plastid | 47.7 | 52.73 |
| CDY23066 | Canola | plastid | 47.04 | 52.0 |
| CDY42873 | Canola | nucleus | 35.86 | 43.78 |
| Bra029315.1-P | Field mustard | nucleus | 32.89 | 42.92 |
| CDY70162 | Canola | nucleus | 27.96 | 39.72 |
| AT1G02030.1 | Thale cress | nucleus | 24.34 | 27.72 |
| AT3G60580.1 | Thale cress | nucleus | 24.67 | 26.04 |
| AT2G45120.1 | Thale cress | nucleus | 25.0 | 24.2 |
| AT3G49930.1 | Thale cress | nucleus | 16.45 | 23.26 |
| AT5G43170.1 | Thale cress | nucleus | 14.14 | 22.28 |
| AT1G27730.1 | Thale cress | nucleus | 16.45 | 22.03 |
| TraesCS7D01G161800.1 | Wheat | nucleus | 14.14 | 20.67 |
| AT5G67450.1 | Thale cress | nucleus | 16.45 | 20.41 |
| TraesCS7B01G065700.1 | Wheat | nucleus | 14.14 | 20.19 |
| TraesCS7A01G160700.2 | Wheat | nucleus | 14.14 | 20.0 |
| Zm00001d029584_P001 | Maize | nucleus | 11.51 | 19.66 |
| AT5G04340.1 | Thale cress | nucleus | 15.13 | 19.33 |
| AT4G16610.1 | Thale cress | nucleus | 12.5 | 18.63 |
| Zm00001d047330_P001 | Maize | nucleus | 11.51 | 18.52 |
| Zm00001d047334_P001 | Maize | nucleus | 13.49 | 18.22 |
| Zm00001d029586_P001 | Maize | nucleus | 13.82 | 18.03 |
| TraesCS2B01G105900.1 | Wheat | nucleus | 11.84 | 18.0 |
| AT3G19580.1 | Thale cress | nucleus | 16.12 | 17.95 |
| EER97472 | Sorghum | nucleus | 11.51 | 17.77 |
| Zm00001d022002_P001 | Maize | nucleus | 11.51 | 17.68 |
| EER92087 | Sorghum | nucleus | 14.8 | 17.58 |
| Os11t0340477-01 | Rice | nucleus | 11.51 | 17.5 |
| Os03t0437100-01 | Rice | nucleus | 11.51 | 17.5 |
| EER92089 | Sorghum | nucleus | 11.84 | 17.39 |
| EER92088 | Sorghum | nucleus | 13.49 | 17.37 |
| TraesCS2A01G090200.1 | Wheat | nucleus | 11.18 | 17.35 |
| TraesCS2D01G088100.1 | Wheat | nucleus | 11.18 | 17.35 |
| Os03t0437200-01 | Rice | cytosol, nucleus, vacuole | 12.5 | 17.27 |
| Zm00001d029587_P001 | Maize | nucleus | 13.82 | 16.94 |
| Os07t0590100-01 | Rice | cytosol, nucleus | 11.18 | 16.83 |
| Zm00001d029589_P001 | Maize | nucleus | 11.51 | 16.67 |
| HORVU2Hr1G014870.1 | Barley | nucleus | 11.84 | 16.67 |
| HORVU3Hr1G028100.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 7.89 | 12.06 |
| AT1G49900.1 | Thale cress | nucleus | 16.78 | 5.56 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:836268 | ProteinID:AED97472.1 | ArrayExpress:AT5G61470 | EnsemblPlantsGene:AT5G61470 |
| RefSeq:AT5G61470 | TAIR:AT5G61470 | RefSeq:AT5G61470-TAIR-G | EnsemblPlants:AT5G61470.1 | TAIR:AT5G61470.1 | Unigene:At.8631 |
| ProteinID:BAB10446.1 | ProteinID:BAH30644.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR013087 | RefSeq:NP_200955.1 |
| PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF322 | UniProt:Q9FII6 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000009D3EB | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9FII6]
Coordinates
chr5:+:24722870..24723983
Molecular Weight (calculated)
34351.9 Da
IEP (calculated)
5.497
GRAVY (calculated)
-0.912
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSLLKKTKI CQVCKKSFSN GKALGGHMRA HTLKFFPGSS SSTGSITPSL RSCNNLGASF RRPNETVLAR FVHTSEVVGG PKPDLNKEAE QRTTVKKKIV
101: VDLEEENSIE SESDITIEES ALCLLQMKDD NMSEYLQNLK SIDSLVSTRK RKDTENYIEI DSDENHEDSD DEYVVEDEDE DNEDDDVKSL TSDVENLIGD
201: SDEDDDDYGD ENAYYGGKRK RGKKQSKYTC DTCGKVLRSY QALGGHRTSH KYKRLKISDK NYFGEDGPIV RRQYECQICN RMFASGQALG GHKKIHYMFL
301: APAK
101: VDLEEENSIE SESDITIEES ALCLLQMKDD NMSEYLQNLK SIDSLVSTRK RKDTENYIEI DSDENHEDSD DEYVVEDEDE DNEDDDVKSL TSDVENLIGD
201: SDEDDDDYGD ENAYYGGKRK RGKKQSKYTC DTCGKVLRSY QALGGHRTSH KYKRLKISDK NYFGEDGPIV RRQYECQICN RMFASGQALG GHKKIHYMFL
301: APAK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.