Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | CDX72645 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | CDY44032 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | CDY50264 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41155 | Canola | nucleus | 86.15 | 90.32 |
| Bra007545.1-P | Field mustard | nucleus | 91.54 | 80.13 |
| CDX89061 | Canola | nucleus | 72.69 | 71.86 |
| CDY71582 | Canola | nucleus | 72.31 | 69.12 |
| CDY48363 | Canola | nucleus | 74.23 | 67.25 |
| CDX67836 | Canola | nucleus | 75.0 | 66.1 |
| AT3G60580.1 | Thale cress | nucleus | 71.54 | 64.58 |
| CDY37027 | Canola | nucleus | 57.69 | 53.38 |
| CDX95629 | Canola | nucleus | 55.77 | 52.92 |
| CDY27394 | Canola | nucleus | 57.31 | 52.28 |
| CDX83402 | Canola | nucleus | 56.92 | 49.66 |
| PGSC0003DMT400053945 | Potato | cytosol | 26.92 | 45.75 |
| Solyc01g090840.2.1 | Tomato | nucleus | 44.62 | 35.91 |
| PGSC0003DMT400066939 | Potato | nucleus | 45.0 | 35.45 |
| CDY09671 | Canola | nucleus | 26.92 | 35.0 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 48.08 | 34.82 |
| CDY40527 | Canola | nucleus | 25.38 | 34.02 |
| CDY32274 | Canola | nucleus | 25.77 | 34.01 |
| KRH76140 | Soybean | nucleus | 47.69 | 33.97 |
| CDY50848 | Canola | nucleus | 26.92 | 33.49 |
| CDY53641 | Canola | nucleus | 26.92 | 33.49 |
| CDY69391 | Canola | nucleus | 27.31 | 33.18 |
| KRH65408 | Soybean | nucleus | 48.85 | 32.73 |
| CDY02102 | Canola | nucleus | 19.62 | 32.28 |
| KRH75355 | Soybean | nucleus | 47.31 | 31.62 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 31.15 | 31.4 |
| CDY22361 | Canola | nucleus | 21.54 | 30.27 |
| CDY23027 | Canola | nucleus | 19.62 | 30.0 |
| CDY30794 | Canola | nucleus | 21.54 | 29.63 |
| CDX81313 | Canola | nucleus | 21.15 | 29.57 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 30.38 | 29.15 |
| CDY03945 | Canola | nucleus | 23.85 | 26.84 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 28.46 | 26.81 |
| CDY43576 | Canola | nucleus | 21.54 | 26.79 |
| CDX83103 | Canola | nucleus | 22.69 | 26.58 |
| CDY18661 | Canola | nucleus | 21.15 | 26.57 |
| CDY37851 | Canola | nucleus | 21.92 | 26.51 |
| CDY51312 | Canola | nucleus | 22.31 | 26.36 |
| CDX68559 | Canola | nucleus | 22.69 | 26.22 |
| CDX68558 | Canola | nucleus | 22.31 | 26.13 |
| CDX95435 | Canola | nucleus | 26.15 | 26.05 |
| CDX70236 | Canola | nucleus, plastid | 22.69 | 25.88 |
| CDX84907 | Canola | nucleus | 22.69 | 25.76 |
| CDY11770 | Canola | nucleus | 23.08 | 25.75 |
| CDX90105 | Canola | nucleus | 23.08 | 25.75 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 32.31 | 25.69 |
| CDY23066 | Canola | plastid | 26.92 | 25.45 |
| CDY42192 | Canola | nucleus | 25.77 | 25.38 |
| CDY65161 | Canola | nucleus | 26.15 | 25.37 |
| CDY02142 | Canola | nucleus | 26.54 | 25.37 |
| CDY27629 | Canola | nucleus | 22.31 | 25.33 |
| CDX99202 | Canola | nucleus | 25.77 | 25.19 |
| CDX82290 | Canola | nucleus | 25.77 | 24.91 |
| CDY46162 | Canola | nucleus | 25.38 | 24.72 |
| CDY36493 | Canola | nucleus | 21.92 | 23.65 |
| CDY42873 | Canola | nucleus | 21.92 | 22.89 |
| CDY08718 | Canola | nucleus | 21.15 | 22.82 |
| CDY70162 | Canola | nucleus | 16.92 | 20.56 |
| CDY50966 | Canola | nucleus | 22.69 | 15.82 |
| CDY28108 | Canola | nucleus | 24.23 | 13.97 |
Protein Annotations
| EnsemblPlants:CDX71799 | EnsemblPlantsGene:GSBRNA2T00155517001 | Gene3D:3.30.160.60 | GO:A0A078C6L2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDX71799 | ProteinID:CDX71799.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EE1F95 | MapMan:15.5.15 | : | : |
Description
BnaC08g30750D
Coordinates
chrLK031795:-:614674..615564
Molecular Weight (calculated)
29275.5 Da
IEP (calculated)
7.312
GRAVY (calculated)
-0.905
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MESYKCKFCF KSFVNGRALG GHMRSHMPTL HKFSIQEEEE RPSQLGDESK SDVSSSEEGQ EQKISGSREE KHPTMDDDGS ETESSRDIKM KTSQLGYKNE
101: PEAEPPQSSA SDTTTEEDLA LCLMMLSRDK WRKNKVSDKM INRATTTTKG RYTCETCGKV FKSYQALGGH RASHKKNRVT NKTDYDIVVV AAEKRIHECP
201: ICLRVFASGQ ALGGHKRSHG LGNLSVNPHH QVRMESVKEK MIDLNLPAPT EEEEVSMVFQ
101: PEAEPPQSSA SDTTTEEDLA LCLMMLSRDK WRKNKVSDKM INRATTTTKG RYTCETCGKV FKSYQALGGH RASHKKNRVT NKTDYDIVVV AAEKRIHECP
201: ICLRVFASGQ ALGGHKRSHG LGNLSVNPHH QVRMESVKEK MIDLNLPAPT EEEEVSMVFQ
001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
Arabidopsis Description
ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.