Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | CDX72645 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | CDY44032 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | CDY50264 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014483.1-P | Field mustard | nucleus | 85.93 | 88.63 |
| CDY48363 | Canola | nucleus | 85.17 | 78.05 |
| CDX71799 | Canola | nucleus | 71.86 | 72.69 |
| CDY41155 | Canola | nucleus | 67.68 | 71.77 |
| CDY71582 | Canola | nucleus | 71.1 | 68.75 |
| CDX67836 | Canola | nucleus | 74.9 | 66.78 |
| AT3G60580.1 | Thale cress | nucleus | 72.24 | 65.97 |
| CDY37027 | Canola | nucleus | 58.56 | 54.8 |
| CDY27394 | Canola | nucleus | 58.56 | 54.04 |
| CDX95629 | Canola | nucleus | 55.13 | 52.92 |
| CDX83402 | Canola | nucleus | 57.79 | 51.01 |
| PGSC0003DMT400053945 | Potato | cytosol | 25.48 | 43.79 |
| CDY09671 | Canola | nucleus | 26.62 | 35.0 |
| Solyc01g090840.2.1 | Tomato | nucleus | 42.59 | 34.67 |
| CDY22361 | Canola | nucleus | 24.33 | 34.59 |
| CDY50848 | Canola | nucleus | 27.38 | 34.45 |
| CDY53641 | Canola | nucleus | 27.38 | 34.45 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 46.77 | 34.26 |
| CDY02102 | Canola | nucleus | 20.53 | 34.18 |
| CDY69391 | Canola | nucleus | 27.76 | 34.11 |
| CDY40527 | Canola | nucleus | 25.1 | 34.02 |
| PGSC0003DMT400066939 | Potato | nucleus | 42.59 | 33.94 |
| CDY32274 | Canola | nucleus | 25.1 | 33.5 |
| CDY30794 | Canola | nucleus | 23.95 | 33.33 |
| KRH76140 | Soybean | nucleus | 46.01 | 33.15 |
| KRH65408 | Soybean | nucleus | 47.15 | 31.96 |
| CDY23027 | Canola | nucleus | 20.53 | 31.76 |
| CDX81313 | Canola | nucleus | 22.05 | 31.18 |
| KRH75355 | Soybean | nucleus | 46.01 | 31.11 |
| CDY43576 | Canola | nucleus | 23.19 | 29.19 |
| CDY03945 | Canola | nucleus | 25.48 | 29.0 |
| CDY37851 | Canola | nucleus | 23.57 | 28.84 |
| CDY18661 | Canola | nucleus | 22.05 | 28.02 |
| CDY27629 | Canola | nucleus | 24.33 | 27.95 |
| CDX84907 | Canola | nucleus | 24.33 | 27.95 |
| CDX90105 | Canola | nucleus | 24.71 | 27.9 |
| CDY11770 | Canola | nucleus | 24.71 | 27.9 |
| CDY51312 | Canola | nucleus | 23.19 | 27.73 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 28.52 | 27.68 |
| CDX70236 | Canola | nucleus, plastid | 23.57 | 27.19 |
| CDX83103 | Canola | nucleus | 22.81 | 27.03 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 26.24 | 26.74 |
| CDX68559 | Canola | nucleus | 22.81 | 26.67 |
| CDX68558 | Canola | nucleus | 22.43 | 26.58 |
| CDX95435 | Canola | nucleus | 25.86 | 26.05 |
| CDY42192 | Canola | nucleus | 25.86 | 25.76 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 27.0 | 25.72 |
| CDX82290 | Canola | nucleus | 26.24 | 25.65 |
| CDY65161 | Canola | nucleus | 25.86 | 25.37 |
| CDY08718 | Canola | nucleus | 23.19 | 25.31 |
| CDY36493 | Canola | nucleus | 23.19 | 25.31 |
| CDX99202 | Canola | nucleus | 25.48 | 25.19 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 30.8 | 24.77 |
| CDY46162 | Canola | nucleus | 25.1 | 24.72 |
| CDY02142 | Canola | nucleus | 25.1 | 24.26 |
| CDY23066 | Canola | plastid | 25.1 | 24.0 |
| CDY42873 | Canola | nucleus | 21.67 | 22.89 |
| CDY70162 | Canola | nucleus | 17.11 | 21.03 |
| CDY50966 | Canola | nucleus | 22.05 | 15.55 |
| CDY28108 | Canola | nucleus | 23.57 | 13.75 |
Protein Annotations
| EnsemblPlants:CDX89061 | EnsemblPlantsGene:GSBRNA2T00149186001 | Gene3D:3.30.160.60 | GO:A0A078DIM2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 |
| PFAM:PF13894 | PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDX89061 | ProteinID:CDX89061.1 | ScanProsite:PS00028 |
| SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EF31F8 | MapMan:15.5.15 | : |
Description
BnaA04g01250D
Coordinates
chrLK031857:+:842178..843023
Molecular Weight (calculated)
30091.5 Da
IEP (calculated)
10.126
GRAVY (calculated)
-1.048
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MESYKCKFCF KSFVNERALG GHMLSLHNFC IEEEARPSQL SDDSESDVSS SSSSSHEVER KRNGLREEKH PTMDDDQRNV TNLTRKRSKR TRKLDSFASK
101: KMKTSQLGYK TEPEPRHSSA SDTTTEEDLA FCLMMLSRDK WKKKKKNNKT SSTTTTKGRF TCETCGKVFK SYQALGGHRA SHKKNRVSNK IEYDSVVVVE
201: EKRIHECPIC LRVFASGQAL GGHKRSHGLG NLSVNHHQVR RTESVKQRML DLNFPAPTEE DKR
101: KMKTSQLGYK TEPEPRHSSA SDTTTEEDLA FCLMMLSRDK WKKKKKNNKT SSTTTTKGRF TCETCGKVFK SYQALGGHRA SHKKNRVSNK IEYDSVVVVE
201: EKRIHECPIC LRVFASGQAL GGHKRSHGLG NLSVNHHQVR RTESVKQRML DLNFPAPTEE DKR
001: MERYKCRFCF KSFINGRALG GHMRSHMLTL SAERCVITGE AEEEVEERPS QLCDDDDDTE SDASSSSGEF DNQKMNRLDD ELEFDFAEDD DVESETESSR
101: INPTRRRSKR TRKLGSFDFD FEKLTTSQPS ELVAEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKKK QRVEEDETDH DSEDYKSSKS RGRFKCETCG
201: KVFKSYQALG GHRASHKKNK ACMTKTEQVE TEYVLGVKEK KVHECPICFR VFTSGQALGG HKRSHGSNIG AGRGLSVSQI VQIEEEVSVK QRMIDLNLPA
301: PNEEDETSLV FDEW
101: INPTRRRSKR TRKLGSFDFD FEKLTTSQPS ELVAEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKKK QRVEEDETDH DSEDYKSSKS RGRFKCETCG
201: KVFKSYQALG GHRASHKKNK ACMTKTEQVE TEYVLGVKEK KVHECPICFR VFTSGQALGG HKRSHGSNIG AGRGLSVSQI VQIEEEVSVK QRMIDLNLPA
301: PNEEDETSLV FDEW
Arabidopsis Description
ZAT4Zinc finger protein ZAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.