Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G097500.3 | Barley | nucleus, plastid | 93.1 | 78.64 |
| Os03t0764100-01 | Rice | nucleus | 80.08 | 77.7 |
| TraesCS5D01G411400.1 | Wheat | nucleus | 96.93 | 75.98 |
| TraesCS5A01G401200.1 | Wheat | nucleus | 95.02 | 75.15 |
| Zm00001d017695_P001 | Maize | extracellular | 34.87 | 65.47 |
| Zm00001d034145_P001 | Maize | nucleus | 67.05 | 62.95 |
| EER90834 | Sorghum | nucleus | 70.11 | 62.89 |
| Zm00001d013208_P001 | Maize | nucleus | 62.84 | 62.12 |
| Os08t0300366-00 | Rice | cytosol, nucleus, plastid | 26.05 | 47.89 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 37.93 | 45.0 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 38.7 | 42.26 |
| TraesCS2B01G212900.1 | Wheat | nucleus | 31.03 | 36.82 |
| TraesCS7B01G065700.1 | Wheat | nucleus | 27.97 | 34.27 |
| TraesCS2B01G105900.1 | Wheat | nucleus | 26.05 | 34.0 |
| Os07t0209600-00 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 32.18 | 28.38 |
| TraesCS6B01G276100.1 | Wheat | nucleus | 22.22 | 18.47 |
| TraesCS1B01G225500.1 | Wheat | nucleus | 22.61 | 17.3 |
| TraesCS2B01G431800.1 | Wheat | nucleus | 20.31 | 17.15 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G406000.1 | EnsemblPlantsGene:TraesCS5B01G406000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF218 | PFAM:PF13912 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr5B:-:581829051..581829836
Molecular Weight (calculated)
27312.2 Da
IEP (calculated)
8.152
GRAVY (calculated)
-0.317
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSAMEALH ALIPEQHQLD VEAAAAVSSA TSGEESGHVL QGWAKRKRSR RQRSEEENLA LCLLMLSRGG KQRVQAPQPE SFAAPVPAEF KCSVCGKSFS
101: SYQALGGHKT SHRVKQPSPP SDAAAAPLVA LPAVAAILPS AEPATSSTAA SSDGATNRVH RCSICQKEFP TGQALGGHKR KHYDGGVGAA ASSTELLAAA
201: AAESEVGSTG NGSSAARAFD LNIPAVPEFV WRPCAKGKMM WEDDEEVQSP LAFKKPRLLT A
101: SYQALGGHKT SHRVKQPSPP SDAAAAPLVA LPAVAAILPS AEPATSSTAA SSDGATNRVH RCSICQKEFP TGQALGGHKR KHYDGGVGAA ASSTELLAAA
201: AAESEVGSTG NGSSAARAFD LNIPAVPEFV WRPCAKGKMM WEDDEEVQSP LAFKKPRLLT A
001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
Arabidopsis Description
ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.