Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G411400.1 | Wheat | nucleus | 96.36 | 95.5 |
| TraesCS5B01G406000.1 | Wheat | nucleus | 75.15 | 95.02 |
| HORVU5Hr1G097500.3 | Barley | nucleus, plastid | 78.79 | 84.14 |
| Os03t0764100-01 | Rice | nucleus | 63.03 | 77.32 |
| Zm00001d017695_P001 | Maize | extracellular | 27.27 | 64.75 |
| Zm00001d034145_P001 | Maize | nucleus | 53.03 | 62.95 |
| EER90834 | Sorghum | nucleus | 55.15 | 62.54 |
| Zm00001d013208_P001 | Maize | nucleus | 50.0 | 62.5 |
| Os08t0300366-00 | Rice | cytosol, nucleus, plastid | 20.61 | 47.89 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 29.09 | 47.06 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 30.3 | 41.49 |
| TraesCS2A01G193900.1 | Wheat | nucleus | 23.94 | 35.91 |
| TraesCS2A01G090200.1 | Wheat | nucleus | 20.91 | 35.2 |
| TraesCS7A01G160700.2 | Wheat | nucleus | 22.73 | 34.88 |
| Os07t0209600-00 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 27.27 | 30.41 |
| TraesCS6A01G248700.1 | Wheat | nucleus | 17.58 | 18.47 |
| TraesCS2A01G413100.1 | Wheat | nucleus | 16.36 | 18.37 |
| TraesCS1A01G211800.1 | Wheat | nucleus | 17.88 | 17.66 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G401200.1 | EnsemblPlantsGene:TraesCS5A01G401200 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF218 | PFAM:PF13912 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr5A:-:594080964..594081956
Molecular Weight (calculated)
35465.3 Da
IEP (calculated)
10.863
GRAVY (calculated)
-0.531
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHLRRNFPR RRPPPRPHRF ITLSLHHSLT PHPARARRTP KQPHSPTLSH RTSKKKKKRS SLSLLCLAMS SSAMEALHAL IPEQQQRDGE MAAAALSGAT
101: SGEESGHVLQ GWAKRKRSRR QRSEEENLAL CLLMLSRGGK QRVQAPQPES FSAPVPAEFK CSVCGKSFSS YQALGGHKTS HRVKQPSPPA DAAAAPLVAL
201: PAVAAVLPSA EPATSSTAAS SDGTTNRVHR CSICQKEFPT GQALGGHKRK HYDGGVGSVA PSSTELLAAA AAESEVGSTG NGSSAARAFD LNIPAVPEFV
301: WRPCAKGKMW EDEEEVQSPL AFKKPRLLTA
101: SGEESGHVLQ GWAKRKRSRR QRSEEENLAL CLLMLSRGGK QRVQAPQPES FSAPVPAEFK CSVCGKSFSS YQALGGHKTS HRVKQPSPPA DAAAAPLVAL
201: PAVAAVLPSA EPATSSTAAS SDGTTNRVHR CSICQKEFPT GQALGGHKRK HYDGGVGSVA PSSTELLAAA AAESEVGSTG NGSSAARAFD LNIPAVPEFV
301: WRPCAKGKMW EDEEEVQSPL AFKKPRLLTA
001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
Arabidopsis Description
ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.