CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68161
CDX73122
CDX85860
CDY45402

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04850.1	CDX68161	AT1G74890.1	18642946
AT1G04850.1	CDX73122	AT1G74890.1	18642946
AT1G04850.1	CDX85860	AT1G74890.1	18642946
AT1G04850.1	CDY45402	AT1G74890.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15524	Canola	nucleus	96.08	94.46
CDY18265	Canola	nucleus	92.16	90.6
AT1G04850.1	Thale cress	cytosol	90.2	89.1
VIT_05s0029g01370.t01	Wine grape	nucleus	81.37	80.39
KRH42800	Soybean	endoplasmic reticulum	79.9	78.55
GSMUA_Achr6P20940_001	Banana	cytosol	24.26	77.95
KRH58887	Soybean	endoplasmic reticulum	78.43	77.11
Solyc12g098420.1.1	Tomato	cytosol	77.45	75.78
PGSC0003DMT400011617	Potato	nucleus	76.72	74.88
TraesCS6B01G119800.1	Wheat	cytosol	74.75	74.21
TraesCS6A01G091500.1	Wheat	nucleus	74.75	74.21
TraesCS6D01G080400.1	Wheat	nucleus	74.51	73.97
HORVU6Hr1G016460.1	Barley	nucleus	74.51	73.97
Os02t0504500-01	Rice	plasma membrane	74.26	73.19
EES05114	Sorghum	cytosol	74.51	73.08
Zm00001d016552_P002	Maize	cytosol	74.02	72.6
GSMUA_Achr6P20930_001	Banana	nucleus	51.96	69.97
CDX89783	Canola	cytosol	15.2	68.13
Zm00001d050551_P007	Maize	cytosol	73.28	66.74
GSMUA_Achr11P...	Banana	mitochondrion	32.6	55.42
GSMUA_Achr11P...	Banana	cytosol	13.73	54.37
CDX86285	Canola	nucleus	43.87	43.45
Zm00001d049805_P001	Maize	cytosol	33.82	42.59
EES14200	Sorghum	cytosol	36.27	42.53
TraesCS7D01G258300.1	Wheat	cytosol	36.03	42.24
CDX85358	Canola	cytosol	43.87	42.12
TraesCS7B01G154400.1	Wheat	cytosol	35.54	41.79
TraesCS7A01G257500.2	Wheat	cytosol	36.52	38.7
PGSC0003DMT400067909	Potato	nucleus	22.06	36.73
Os08t0526700-00	Rice	plasma membrane	16.91	35.38
Solyc09g092040.2.1	Tomato	cytosol	21.08	34.68

Protein Annotations

Gene3D:1.10.8.10	Gene3D:1.20.58.2190	MapMan:35.2	GO:A0A078DH03	EnsemblPlants:CDX86603	ProteinID:CDX86603
ProteinID:CDX86603.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00145252001	InterPro:IPR013087	InterPro:IPR015940	PFAM:PF00627	PFAM:PF09409	ScanProsite:PS00028
PFscan:PS50030	PANTHER:PTHR13020	PANTHER:PTHR13020:SF33	InterPro:PUB-like_dom_sf	InterPro:PUB_domain	SMART:SM00165
SMART:SM00580	SUPFAM:SSF143503	SUPFAM:SSF46934	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EE4ABB
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

BnaC08g01000D

Coordinates

chrLK031846:+:1028336..1031540

Molecular Weight (calculated)

46119.1 Da

IEP (calculated)

6.176

GRAVY (calculated)

-0.789

Length

408 amino acids

Sequence
(BLAST)

001: MAGVSLECGD CGALLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCSK PCRSKTESDL HTKRTGHTEF VDKTMETVKP ISLEAPKAAM EIANHEDAAE
101: VEMVVPDVDK NILEELEAMG FPKARATRAL HYSGNASLEA AVNWVVEHEN DPDVDEMPKV PANSNAGPPK PALTPEEVKI KAQELRERAR KKKEEEEKRM
201: EREREKERIR IGKELLEAKR IEEDNERKRI ILLRKAEKEE ERRAREKIRQ KVEEDKAERR RKLGLPAEDP AAAKPSVPVV EEKKSSLPIR PATKTEKMRE
301: CLRSLKQAHK EEDAKVKRAF QTLLTYMGNV AKNPDEEKFR KIRLTNQTFQ ERVGSLRGGI EFMELCGFEK MEGGEFLFLP RDKIDPAVIN SAGTELNSAI
401: NNPFFGVL

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.