Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15524 | Canola | nucleus | 92.01 | 91.57 |
| Bra030592.1-P | Field mustard | nucleus | 91.77 | 91.55 |
| CDY18265 | Canola | nucleus | 91.53 | 91.08 |
| CDX86603 | Canola | nucleus | 89.1 | 90.2 |
| VIT_05s0029g01370.t01 | Wine grape | nucleus | 80.39 | 80.39 |
| KRH42800 | Soybean | endoplasmic reticulum | 79.42 | 79.04 |
| KRH58887 | Soybean | endoplasmic reticulum | 77.97 | 77.59 |
| GSMUA_Achr6P20940_001 | Banana | cytosol | 23.49 | 76.38 |
| Solyc12g098420.1.1 | Tomato | cytosol | 74.82 | 74.1 |
| PGSC0003DMT400011617 | Potato | nucleus | 74.58 | 73.68 |
| Zm00001d016552_P002 | Maize | cytosol | 73.12 | 72.6 |
| EES05114 | Sorghum | cytosol | 73.12 | 72.6 |
| HORVU6Hr1G016460.1 | Barley | nucleus | 71.91 | 72.26 |
| TraesCS6B01G119800.1 | Wheat | cytosol | 71.91 | 72.26 |
| TraesCS6A01G091500.1 | Wheat | nucleus | 71.91 | 72.26 |
| Os02t0504500-01 | Rice | plasma membrane | 72.4 | 72.22 |
| TraesCS6D01G080400.1 | Wheat | nucleus | 71.67 | 72.02 |
| GSMUA_Achr6P20930_001 | Banana | nucleus | 51.33 | 69.97 |
| Zm00001d050551_P007 | Maize | cytosol | 71.91 | 66.29 |
| GSMUA_Achr11P... | Banana | mitochondrion | 32.45 | 55.83 |
| GSMUA_Achr11P... | Banana | cytosol | 13.08 | 52.43 |
| AT5G48690.1 | Thale cress | nucleus | 39.23 | 50.15 |
| Zm00001d049805_P001 | Maize | cytosol | 34.14 | 43.52 |
| EES14200 | Sorghum | cytosol | 36.56 | 43.39 |
| TraesCS7D01G258300.1 | Wheat | cytosol | 36.32 | 43.1 |
| TraesCS7B01G154400.1 | Wheat | cytosol | 35.84 | 42.65 |
| TraesCS7A01G257500.2 | Wheat | cytosol | 36.8 | 39.48 |
| PGSC0003DMT400067909 | Potato | nucleus | 21.55 | 36.33 |
| Os08t0526700-00 | Rice | plasma membrane | 16.22 | 34.36 |
| Solyc09g092040.2.1 | Tomato | cytosol | 20.58 | 34.27 |
Protein Annotations
| Gene3D:1.10.8.10 | Gene3D:1.20.58.2190 | MapMan:35.2 | EntrezGene:839399 | UniProt:A0A178W2G7 | ProteinID:AAF40452.1 |
| ProteinID:AEE27751.1 | ProteinID:ANM60889.1 | ArrayExpress:AT1G04850 | EnsemblPlantsGene:AT1G04850 | RefSeq:AT1G04850 | TAIR:AT1G04850 |
| RefSeq:AT1G04850-TAIR-G | EnsemblPlants:AT1G04850.1 | TAIR:AT1G04850.1 | EMBL:AY062609 | EMBL:AY088435 | Unigene:At.21872 |
| EMBL:BT000147 | MEROPS:C19.089 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| InterPro:IPR013087 | InterPro:IPR015940 | RefSeq:NP_001323139.1 | RefSeq:NP_563718.1 | ProteinID:OAP12336.1 | PFAM:PF00627 |
| PFAM:PF09409 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00028 | PFscan:PS50030 | PANTHER:PTHR13020 | PANTHER:PTHR13020:SF33 |
| InterPro:PUB-like_dom_sf | InterPro:PUB_domain | UniProt:Q9MAT3 | SMART:SM00165 | SMART:SM00580 | SUPFAM:SSF143503 |
| SUPFAM:SSF46934 | InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI00000AC54D | InterPro:Znf_C2H2_type | SEG:seg |
Description
F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
Coordinates
chr1:-:1365118..1368940
Molecular Weight (calculated)
46605.7 Da
IEP (calculated)
6.038
GRAVY (calculated)
-0.753
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.