Factsheet for HORVU6Hr1G016460.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G119800.1	Wheat	cytosol	98.3	98.3
TraesCS6A01G091500.1	Wheat	nucleus	98.05	98.05
TraesCS6D01G080400.1	Wheat	nucleus	97.81	97.81
Os02t0504500-01	Rice	plasma membrane	88.56	87.92
EES05114	Sorghum	cytosol	88.32	87.26
Zm00001d016552_P002	Maize	cytosol	85.89	84.86
Zm00001d050551_P007	Maize	cytosol	85.89	78.79
GSMUA_Achr6P20940_001	Banana	cytosol	24.09	77.95
CDX86603	Canola	nucleus	73.97	74.51
CDY15524	Canola	nucleus	74.45	73.73
Bra030592.1-P	Field mustard	nucleus	74.21	73.67
VIT_05s0029g01370.t01	Wine grape	nucleus	73.97	73.61
CDY18265	Canola	nucleus	73.48	72.77
AT1G04850.1	Thale cress	cytosol	72.26	71.91
KRH58887	Soybean	endoplasmic reticulum	72.02	71.33
KRH42800	Soybean	endoplasmic reticulum	71.78	71.08
Solyc12g098420.1.1	Tomato	cytosol	71.05	70.02
PGSC0003DMT400011617	Potato	nucleus	70.56	69.38
GSMUA_Achr11P...	Banana	mitochondrion	32.6	55.83
PGSC0003DMT400067909	Potato	nucleus	20.68	34.69
Solyc09g092040.2.1	Tomato	cytosol	19.22	31.85

Protein Annotations

Gene3D:1.10.8.10	Gene3D:1.20.58.2190	MapMan:35.2	UniProt:A0A287TFN9	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	EnsemblPlantsGene:HORVU6Hr1G016460	EnsemblPlants:HORVU6Hr1G016460.1	InterPro:IPR013087	InterPro:IPR015940
PFAM:PF00627	PFAM:PF09409	ScanProsite:PS00028	PFscan:PS50030	PANTHER:PTHR13020	PANTHER:PTHR13020:SF34
InterPro:PUB-like_dom_sf	InterPro:PUB_domain	SMART:SM00165	SMART:SM00580	SUPFAM:SSF143503	SUPFAM:SSF46934
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000B470BFF	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:-:37274278..37279768

Molecular Weight (calculated)

46207.1 Da

IEP (calculated)

5.884

GRAVY (calculated)

-0.795

Length

411 amino acids

Sequence
(BLAST)

001: MAGLSLRCGD CGVQLRSVEE AQAHAEATSH TNFAESTEAV LNLVCADCGK PCRSQTEVDL HKKRTGHAEF TDKTMEAAKP IDLEAPPKPA AEAMDVDASG
101: SAEPQELVAP EVNKEMLGEL ESMGFSTARA TRALHFSGNS TIEGAINWLS EHQEDPDIDE MPMVPANSEA NKPSLTAEEK KIKAQELRER ARKKKEEEER
201: RMEREKEKER IRIGKELLEA KKMEELNERK RIIELRRLEK EEEKRAREKI RQKLEEDKAE RRRKLGLPAE APAASKPSAP PPVEEKKSAF LPVRPATKAE
301: RMRDCLRNIK QQNKEEDAKV KRAFQTLLTY IGNVVKNPDE EKFRKIRLTN ATFQERVGSL GGIEFLELCG FEKPEGEEIL FLARDKVDKA VLNVAGAELN
401: SAITNPFFGV L

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.