CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04850.1	KRH03376	AT1G74890.1	18642946
AT1G04850.1	KRH54462	AT1G74890.1	18642946
AT1G04850.1	KRH57009	AT1G74890.1	18642946
AT1G04850.1	KRH63457	AT1G74890.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42800	Soybean	endoplasmic reticulum	95.9	95.9
VIT_05s0029g01370.t01	Wine grape	nucleus	81.45	81.84
CDY15524	Canola	nucleus	78.55	78.55
CDY18265	Canola	nucleus	78.55	78.55
Bra030592.1-P	Field mustard	nucleus	78.31	78.5
CDX86603	Canola	nucleus	77.11	78.43
AT1G04850.1	Thale cress	cytosol	77.59	77.97
GSMUA_Achr6P20940_001	Banana	cytosol	23.86	77.95
Solyc12g098420.1.1	Tomato	cytosol	73.98	73.62
PGSC0003DMT400011617	Potato	nucleus	73.98	73.44
EES05114	Sorghum	cytosol	73.25	73.08
Zm00001d016552_P002	Maize	cytosol	72.53	72.36
Os02t0504500-01	Rice	plasma membrane	72.05	72.22
HORVU6Hr1G016460.1	Barley	nucleus	71.33	72.02
TraesCS6B01G119800.1	Wheat	cytosol	71.33	72.02
TraesCS6D01G080400.1	Wheat	nucleus	71.08	71.78
TraesCS6A01G091500.1	Wheat	nucleus	71.08	71.78
GSMUA_Achr6P20930_001	Banana	nucleus	51.08	69.97
Zm00001d050551_P007	Maize	cytosol	71.33	66.07
KRH07644	Soybean	cytosol	47.71	63.87
GSMUA_Achr11P...	Banana	mitochondrion	33.98	58.75
GSMUA_Achr11P...	Banana	cytosol	13.98	56.31
EES14200	Sorghum	cytosol	37.35	44.54
TraesCS7D01G258300.1	Wheat	cytosol	37.11	44.25
Zm00001d049805_P001	Maize	cytosol	34.46	44.14
TraesCS7B01G154400.1	Wheat	cytosol	36.63	43.8
TraesCS7A01G257500.2	Wheat	cytosol	37.35	40.26
Os08t0526700-00	Rice	plasma membrane	17.11	36.41
PGSC0003DMT400067909	Potato	nucleus	21.2	35.92
Solyc09g092040.2.1	Tomato	cytosol	19.76	33.06

Protein Annotations

Gene3D:1.10.8.10	Gene3D:1.20.58.2190	EntrezGene:100779218	MapMan:35.2	EMBL:ACUP02003293	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G154200	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	UniProt:I1K3U6
InterPro:IPR013087	InterPro:IPR015940	EnsemblPlants:KRH58887	ProteinID:KRH58887	ProteinID:KRH58887.1	PFAM:PF00627
PFAM:PF09409	ScanProsite:PS00028	PFscan:PS50030	PANTHER:PTHR13020	PANTHER:PTHR13020:SF33	InterPro:PUB-like_dom_sf
InterPro:PUB_domain	SMART:SM00165	SMART:SM00580	SUPFAM:SSF143503	SUPFAM:SSF46934	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0002339851	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:34750949..34760627

Molecular Weight (calculated)

46896.9 Da

IEP (calculated)

7.150

GRAVY (calculated)

-0.820

Length

415 amino acids

Sequence
(BLAST)

001: MAGVSLKCGD CGALLRTVEE AQEHAELTSH SNFSESTEPV LNLICSVCSK PCRSKTESDL HTKRTGHTEF VDKTSEAVKP ISLEAPKVDA TASSENPSAA
101: ASTDKNEEMV VPEVDKKLLK ELESMGFSTA RATRALHYSG NAGLESAVNW IVEHENDPDI DQMPLVPANT KIEAPKPLLT PEEMKAKQQE LRERARKKKE
201: EEEKRMERER EKERIRIGKE LLEAKRIEEE NERKRLLALK KVEKEEEKRA REKIKKKLEE DKAERRRRLG LPPEEPSAAK PSPAPIVEEK KSFVPVRPAT
301: KAEQMRECLR SLKQNHKEDD ARVKRAFQTL LTYVGNVARN PDEEKFRKIR LSNQSFQDRV GSLKGGIEFL EICGFEKIDG GEFLFLPRDK VEMAVLNSAG
401: SELDSAIKNP FFGVL

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.