Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plasma membrane 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063187 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04850.1 | PGSC0003DMT400063187 | AT1G74890.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g098420.1.1 | Tomato | cytosol | 97.13 | 97.36 |
| CDX86603 | Canola | nucleus | 74.88 | 76.72 |
| CDY15524 | Canola | nucleus | 76.08 | 76.63 |
| CDY18265 | Canola | nucleus | 76.08 | 76.63 |
| Bra030592.1-P | Field mustard | nucleus | 75.84 | 76.57 |
| VIT_05s0029g01370.t01 | Wine grape | nucleus | 74.4 | 75.3 |
| KRH42800 | Soybean | endoplasmic reticulum | 74.64 | 75.18 |
| AT1G04850.1 | Thale cress | cytosol | 73.68 | 74.58 |
| GSMUA_Achr6P20940_001 | Banana | cytosol | 22.49 | 74.02 |
| KRH58887 | Soybean | endoplasmic reticulum | 73.44 | 73.98 |
| EES05114 | Sorghum | cytosol | 71.53 | 71.88 |
| Os02t0504500-01 | Rice | plasma membrane | 71.05 | 71.74 |
| Zm00001d016552_P002 | Maize | cytosol | 70.33 | 70.67 |
| HORVU6Hr1G016460.1 | Barley | nucleus | 69.38 | 70.56 |
| TraesCS6B01G119800.1 | Wheat | cytosol | 68.9 | 70.07 |
| TraesCS6D01G080400.1 | Wheat | nucleus | 68.66 | 69.83 |
| TraesCS6A01G091500.1 | Wheat | nucleus | 68.66 | 69.83 |
| GSMUA_Achr6P20930_001 | Banana | nucleus | 50.48 | 69.64 |
| Zm00001d050551_P007 | Maize | cytosol | 70.33 | 65.62 |
| GSMUA_Achr11P... | Banana | mitochondrion | 31.34 | 54.58 |
| GSMUA_Achr11P... | Banana | cytosol | 12.2 | 49.51 |
| PGSC0003DMT400069104 | Potato | nucleus | 34.69 | 47.7 |
| EES14200 | Sorghum | cytosol | 35.17 | 42.24 |
| Zm00001d049805_P001 | Maize | cytosol | 32.3 | 41.67 |
| TraesCS7D01G258300.1 | Wheat | cytosol | 34.21 | 41.09 |
| TraesCS7B01G154400.1 | Wheat | cytosol | 33.97 | 40.92 |
| PGSC0003DMT400067909 | Potato | nucleus | 22.97 | 39.18 |
| TraesCS7A01G257500.2 | Wheat | cytosol | 34.93 | 37.92 |
| Os08t0526700-00 | Rice | plasma membrane | 16.99 | 36.41 |
Protein Annotations
| Gene3D:1.10.8.10 | Gene3D:1.20.58.2190 | EntrezGene:102584411 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR013087 | InterPro:IPR015940 | UniProt:M0ZZV1 |
| PFAM:PF00627 | PFAM:PF09409 | EnsemblPlantsGene:PGSC0003DMG401004570 | PGSC:PGSC0003DMG401004570 | EnsemblPlants:PGSC0003DMT400011617 | ScanProsite:PS00028 |
| PFscan:PS50030 | PANTHER:PTHR13020 | PANTHER:PTHR13020:SF34 | InterPro:PUB-like_dom_sf | InterPro:PUB_domain | SMART:SM00165 |
| SMART:SM00580 | SUPFAM:SSF143503 | SUPFAM:SSF46934 | InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI000295C301 |
| RefSeq:XP_006349921.1 | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
Ubiquitin-associated /TS-N domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401004570]
Coordinates
chr12:+:59205441..59211759
Molecular Weight (calculated)
47043.6 Da
IEP (calculated)
5.955
GRAVY (calculated)
-0.845
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGVSLQCGD CGTLFKSVAE AQEHAEVTSH ANFSESTEAV LNLACTACGK PCRSKTESDL HTKRTGHTEF TDKTAEGVKP ISLEVPKAKA DNDEDMAEVG
101: DDSGTDQHEE MVVPEVDENL LSELETMGFS KARAIRALHF SGNASLEAAV NWVVEHESDP DIDETPMVPA SAKKGEAPRP SLTPEEIKMK QLELRERARK
201: KKEEEERQRE REREKERIRI GKELLEAKRI EEDNERKRII ALRKAEKAEE QRAREKIRQK LEEDKAERRR KVGLPAEDPA SPKPSTPVVE EKKSSFLPVR
301: PATKAERMRE CLRTLKQTHK DDEAKVKTAF NTLLTYAKNV ATNPNEEKFR KIRLSNAAFQ DRIGKLQGGI EFLEHCGFEK IEGGEFLYLP REKVDIAVLN
401: TAGTELNNAI KNPFFGVL
101: DDSGTDQHEE MVVPEVDENL LSELETMGFS KARAIRALHF SGNASLEAAV NWVVEHESDP DIDETPMVPA SAKKGEAPRP SLTPEEIKMK QLELRERARK
201: KKEEEERQRE REREKERIRI GKELLEAKRI EEDNERKRII ALRKAEKAEE QRAREKIRQK LEEDKAERRR KVGLPAEDPA SPKPSTPVVE EKKSSFLPVR
301: PATKAERMRE CLRTLKQTHK DDEAKVKTAF NTLLTYAKNV ATNPNEEKFR KIRLSNAAFQ DRIGKLQGGI EFLEHCGFEK IEGGEFLYLP REKVDIAVLN
401: TAGTELNNAI KNPFFGVL
001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
Arabidopsis Description
F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.