Factsheet for PGSC0003DMT400069104

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g059630.1.1	Tomato	endoplasmic reticulum, extracellular	87.5	78.47
VIT_07s0185g00030.t01	Wine grape	cytosol	51.64	51.14
KRH07644	Soybean	cytosol	50.66	49.68
CDX89783	Canola	cytosol	13.82	46.15
AT5G48690.1	Thale cress	nucleus	47.7	44.89
Bra037466.1-P	Field mustard	nucleus	49.01	36.08
CDX86285	Canola	nucleus	48.68	35.92
CDX85358	Canola	cytosol	49.67	35.53
PGSC0003DMT400011617	Potato	nucleus	47.7	34.69
PGSC0003DMT400067909	Potato	nucleus	24.67	30.61

Protein Annotations

EnsemblPlants:PGSC0003DMT400069104	EnsemblPlantsGene:PGSC0003DMG400026879	Gene3D:1.20.58.2190	InterPro:PUB-like_dom_sf	InterPro:PUB_domain	ncoils:Coil
PANTHER:PTHR13020	PANTHER:PTHR13020:SF34	PFAM:PF09409	PGSC:PGSC0003DMG400026879	SEG:seg	SMART:SM00580
SUPFAM:SSF143503	UniParc:UPI000294D90F	UniProt:M1CJX5	MapMan:35.2	:	:

Description

Ubiquitin-associated /TS-N domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026879]

Coordinates

chr9:+:30600958..30605649

Molecular Weight (calculated)

35321.5 Da

IEP (calculated)

10.025

GRAVY (calculated)

-0.769

Length

304 amino acids

Sequence
(BLAST)

001: MYPFVVNLTL HFYDSKSLLF SGNSSLEAAV NWIVDHEDET YNDEMPMVSV DIIETPTPTF DSEQAKLKAQ DLRDRARKRR EEEEKKLDKE REKERIRAGK
101: ERLATKRMAE ENERKRFEAQ RKTEKEEERR ARERIRQKLQ QDMADRKARL GSSLNSGTSL KSIKTSEPET KNPLKVDSAM LSGNLITKKE VLMECLRSLR
201: RQHKEEDMKV QRAFKTLLVY VRNIVSNPDD GKFRKIRLSN PAFQARVGLF KEGVQFLELC GFERAEKGDF LVLRSDKVDM ALLRSAGMVL HTAITNPFFG
301: LLSM

Best Arabidopsis Sequence Match ( AT5G48690.1 )
(BLAST)

001: MSDGTENAAI EVNHGLLKEL EDMGFSMARA AWALHHSGNS SLEAAVNWII DHENESQFEN MPLVEFNIEI ESPNPSDDTA ETSHARAKEL SEQARKLREE
101: QETKRERERE KERIRAGKEL METKRIAEEN ERKRNIALRK AEKDEEKKAR EKIMLKVNAD KLERKRRLGL PTETESASTS NPVSPLDPKR IVMSSPSVVS
201: KAEEMRECLR SLRRNHKDED PRITRRVFET LLTIVRNVAK KPDEERYRRI RLKNRLFHER VGRYKEGIEF MELCGFKRVE GSEFLSLSKR DSDINRLRDA
301: AFLLNSASAN PFFGLLSTEA ERP

Arabidopsis Description

Ubiquitin-associated (UBA)/TS-N domain protein [Source:UniProtKB/TrEMBL;Acc:Q5XV09]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.