Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86285 | Canola | nucleus | 96.37 | 96.6 |
| AT5G48690.1 | Thale cress | nucleus | 60.05 | 76.78 |
| VIT_07s0185g00030.t01 | Wine grape | cytosol | 38.98 | 52.44 |
| KRH07644 | Soybean | cytosol | 38.98 | 51.94 |
| PGSC0003DMT400069104 | Potato | nucleus | 36.08 | 49.01 |
| Solyc09g059630.1.1 | Tomato | endoplasmic reticulum, extracellular | 39.95 | 48.67 |
| Bra030592.1-P | Field mustard | nucleus | 42.37 | 42.27 |
Protein Annotations
| Gene3D:1.10.8.10 | Gene3D:1.20.58.2190 | MapMan:19.2.2.2.1 | Gene3D:3.10.20.90 | EnsemblPlantsGene:Bra037466 | EnsemblPlants:Bra037466.1 |
| EnsemblPlants:Bra037466.1-P | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR015940 |
| UniProt:M4F8Q4 | PFAM:PF09409 | PFscan:PS50030 | PANTHER:PTHR13020 | PANTHER:PTHR13020:SF33 | InterPro:PUB-like_dom_sf |
| InterPro:PUB_domain | SMART:SM00580 | SUPFAM:SSF143503 | SUPFAM:SSF46934 | SUPFAM:SSF54236 | InterPro:UBA |
| InterPro:UBA-like_sf | UniParc:UPI000253F980 | InterPro:Ubiquitin-like_domsf | SEG:seg | : | : |
Description
AT5G48690 (E=2e-119) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), PUG (InterPro:IPR006567), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 6741 Blast hits to 4773 proteins in 362 species: Archae - 9; Bacteria - 355; Metazoa - 2762; Fungi - 868; Plants - 184; Viruses - 19; Other Eukaryotes - 2544 (source: NCBI BLink).
Coordinates
chrA06:-:21306676..21309185
Molecular Weight (calculated)
47968.9 Da
IEP (calculated)
9.814
GRAVY (calculated)
-1.039
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKQNRESG STSVKKEEKK AKVESASTHV TLRFKGQDEE EIRVFRMRRN VEMRKVMKRY GETRGVKWTT FVFILKDGTR IRESHTPDER SKNMPAETES
101: DVVEVNRGLL KELEDMGFSM ARAAWALHHS GNSSLEEAVN WIVDHENDSQ FDKAPVVEFN IEIESPSPHD DTSQARANEL KERARKLREE EETKRERERE
201: KERIRAGKEM METRRIAEEN ERKRNIALRK AEKDEGKKAR EKVMLKVNAD KAERKSRHGL PTEAQSTSTS TLVAPLDTKR ILMPSPSPVS KAEEMRECLR
301: SLRRNHKEED PRTMRRAFET LLMIVRNAAK TPDEEKYRRI RVTNRLFQER VGRFKEGMEF MELCGFKREG GSEFLSLAND EGDMSRLRDA AFQLQSAVTN
401: PFFGLLSKEA AEE
101: DVVEVNRGLL KELEDMGFSM ARAAWALHHS GNSSLEEAVN WIVDHENDSQ FDKAPVVEFN IEIESPSPHD DTSQARANEL KERARKLREE EETKRERERE
201: KERIRAGKEM METRRIAEEN ERKRNIALRK AEKDEGKKAR EKVMLKVNAD KAERKSRHGL PTEAQSTSTS TLVAPLDTKR ILMPSPSPVS KAEEMRECLR
301: SLRRNHKEED PRTMRRAFET LLMIVRNAAK TPDEEKYRRI RVTNRLFQER VGRFKEGMEF MELCGFKREG GSEFLSLAND EGDMSRLRDA AFQLQSAVTN
401: PFFGLLSKEA AEE
001: MSDGTENAAI EVNHGLLKEL EDMGFSMARA AWALHHSGNS SLEAAVNWII DHENESQFEN MPLVEFNIEI ESPNPSDDTA ETSHARAKEL SEQARKLREE
101: QETKRERERE KERIRAGKEL METKRIAEEN ERKRNIALRK AEKDEEKKAR EKIMLKVNAD KLERKRRLGL PTETESASTS NPVSPLDPKR IVMSSPSVVS
201: KAEEMRECLR SLRRNHKDED PRITRRVFET LLTIVRNVAK KPDEERYRRI RLKNRLFHER VGRYKEGIEF MELCGFKRVE GSEFLSLSKR DSDINRLRDA
301: AFLLNSASAN PFFGLLSTEA ERP
101: QETKRERERE KERIRAGKEL METKRIAEEN ERKRNIALRK AEKDEEKKAR EKIMLKVNAD KLERKRRLGL PTETESASTS NPVSPLDPKR IVMSSPSVVS
201: KAEEMRECLR SLRRNHKDED PRITRRVFET LLTIVRNVAK KPDEERYRRI RLKNRLFHER VGRYKEGIEF MELCGFKRVE GSEFLSLSKR DSDINRLRDA
301: AFLLNSASAN PFFGLLSTEA ERP
Arabidopsis Description
Ubiquitin-associated (UBA)/TS-N domain protein [Source:UniProtKB/TrEMBL;Acc:Q5XV09]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.