Factsheet for VIT_07s0185g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07644	Soybean	cytosol	65.15	64.52
CDX89783	Canola	cytosol	16.29	54.95
PGSC0003DMT400069104	Potato	nucleus	51.14	51.64
VIT_05s0029g01370.t01	Wine grape	nucleus	69.38	51.57
AT5G48690.1	Thale cress	nucleus	51.79	49.23
Solyc09g059630.1.1	Tomato	endoplasmic reticulum, extracellular	54.07	48.97
CDX86285	Canola	nucleus	52.44	39.08
Bra037466.1-P	Field mustard	nucleus	52.44	38.98
CDX85358	Canola	cytosol	52.12	37.65

Protein Annotations

Gene3D:1.10.8.10	Gene3D:1.20.58.2190	EntrezGene:100264566	wikigene:100264566	MapMan:35.2	ProteinID:CBI33006
ProteinID:CBI33006.3	ncoils:Coil	UniProt:D7TR83	EMBL:FN596013	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015940	EntrezGene:LOC100264566	wikigene:LOC100264566	PFAM:PF00627	PFAM:PF09409
PFscan:PS50030	PANTHER:PTHR13020	PANTHER:PTHR13020:SF33	InterPro:PUB-like_dom_sf	InterPro:PUB_domain	SMART:SM00165
SMART:SM00580	SUPFAM:SSF143503	SUPFAM:SSF46934	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00015CDE35
ArrayExpress:VIT_07s0185g00030	EnsemblPlantsGene:VIT_07s0185g00030	EnsemblPlants:VIT_07s0185g00030.t01	RefSeq:XP_002266926	RefSeq:XP_002266926.2	RefSeq:XP_010652620.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:14025095..14037461

Molecular Weight (calculated)

35479.5 Da

IEP (calculated)

9.056

GRAVY (calculated)

-0.774

Length

307 amino acids

Sequence
(BLAST)

001: MAVPEVNKEF LGELEAMGFP VARATRALHF SGNDSLAAAV SWIIDHENDP DIDQMPSITV DIGIESPKPF QISEEMKKKA QELRNRARRR QEEEEKKRER
101: EREKNRIRAG KELLEAKRID EENERKRMLA YWESEKEEQK RAREKLLKKL MEDKAERRSK LGLPPENPAS VKTSLPVVLE KNSLFTKLDT KAEPLRECLR
201: FLKKSHKNDD ARVKRAFQTL LIYIRNVAKH PDEEKFRKIR FSNPAFQERV GSLTGGIEFL ELCGFERTED GEFLFLPQEK VDMAVLNSAG SVLNSAMTNP
301: FFGVFSS

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.