CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86285	Canola	nucleus	85.18	87.86
AT5G48690.1	Thale cress	nucleus	57.41	75.54
VIT_07s0185g00030.t01	Wine grape	cytosol	37.65	52.12
KRH07644	Soybean	cytosol	37.65	51.61
PGSC0003DMT400069104	Potato	nucleus	35.53	49.67
Solyc09g059630.1.1	Tomato	endoplasmic reticulum, extracellular	39.29	49.26
CDX86603	Canola	nucleus	42.12	43.87
CDX89783	Canola	cytosol	9.18	42.86
CDY15524	Canola	nucleus	41.65	42.65
CDY18265	Canola	nucleus	41.41	42.41

Protein Annotations

Gene3D:1.10.8.10	Gene3D:1.20.58.2190	MapMan:19.2.2.2.1	Gene3D:3.10.20.90	EnsemblPlants:CDX85358	ProteinID:CDX85358
ProteinID:CDX85358.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00143030001
InterPro:IPR000626	InterPro:IPR015940	PFAM:PF09409	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR13020
PANTHER:PTHR13020:SF34	InterPro:PUB-like_dom_sf	InterPro:PUB_domain	SMART:SM00580	SUPFAM:SSF143503	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EE7914	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

BnaC07g26690D

Coordinates

chrLK031841:-:1384223..1386919

Molecular Weight (calculated)

49063.6 Da

IEP (calculated)

9.932

GRAVY (calculated)

-0.926

Length

425 amino acids

Sequence
(BLAST)

001: MSTKQGRESG STSVKKEEKK VKSESASTHV TLRFKGQVRE EVRVFRMRRN VEMRKVMKRY GETRGVKWTP FVFILKDGTR IRESHTPDEL ELKDGAKIDA
101: MLHHEGGGYA ESDVLEVNRG LLKELEDMGF SMARAAWGLH HSGNSSLEAA VNWIVDHEND SQFDKTPVVE FNIEIESPSP GDDTAETAQA RANELKERAR
201: KLREEEETKR EREREKERIR AGKEMMETRR IAEENERKRN IALRKAEKEE EKKAREKVMM KVNADKAERK SRLGLPTVAE STSTSTLVAP LDTKLQKMLM
301: PSKSKEMREC LRSLRRNHKE EDPRTMRRAF DTLLMIVRNA AKTPDEEKYR RIRVTNRLFQ ERVGRFKEGL EFMELCGFKR EGGSEFLSLA KHDADLSLLR
401: DAAFQLQSAV TNPFFGLLSK EAAEE

Best Arabidopsis Sequence Match ( AT5G48690.1 )
(BLAST)

001: MSDGTENAAI EVNHGLLKEL EDMGFSMARA AWALHHSGNS SLEAAVNWII DHENESQFEN MPLVEFNIEI ESPNPSDDTA ETSHARAKEL SEQARKLREE
101: QETKRERERE KERIRAGKEL METKRIAEEN ERKRNIALRK AEKDEEKKAR EKIMLKVNAD KLERKRRLGL PTETESASTS NPVSPLDPKR IVMSSPSVVS
201: KAEEMRECLR SLRRNHKDED PRITRRVFET LLTIVRNVAK KPDEERYRRI RLKNRLFHER VGRYKEGIEF MELCGFKRVE GSEFLSLSKR DSDINRLRDA
301: AFLLNSASAN PFFGLLSTEA ERP

Arabidopsis Description

Ubiquitin-associated (UBA)/TS-N domain protein [Source:UniProtKB/TrEMBL;Acc:Q5XV09]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.