Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04850.1 | CDX68161 | AT1G74890.1 | 18642946 |
| AT1G04850.1 | CDX73122 | AT1G74890.1 | 18642946 |
| AT1G04850.1 | CDX85860 | AT1G74890.1 | 18642946 |
| AT1G04850.1 | CDY45402 | AT1G74890.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030592.1-P | Field mustard | nucleus | 99.52 | 99.76 |
| CDX86603 | Canola | nucleus | 94.46 | 96.08 |
| CDY18265 | Canola | nucleus | 95.18 | 95.18 |
| AT1G04850.1 | Thale cress | cytosol | 91.57 | 92.01 |
| VIT_05s0029g01370.t01 | Wine grape | nucleus | 80.72 | 81.11 |
| KRH42800 | Soybean | endoplasmic reticulum | 80.0 | 80.0 |
| KRH58887 | Soybean | endoplasmic reticulum | 78.55 | 78.55 |
| GSMUA_Achr6P20940_001 | Banana | cytosol | 23.61 | 77.17 |
| Solyc12g098420.1.1 | Tomato | cytosol | 77.35 | 76.98 |
| PGSC0003DMT400011617 | Potato | nucleus | 76.63 | 76.08 |
| HORVU6Hr1G016460.1 | Barley | nucleus | 73.73 | 74.45 |
| TraesCS6B01G119800.1 | Wheat | cytosol | 73.49 | 74.21 |
| TraesCS6A01G091500.1 | Wheat | nucleus | 73.49 | 74.21 |
| TraesCS6D01G080400.1 | Wheat | nucleus | 73.25 | 73.97 |
| EES05114 | Sorghum | cytosol | 73.98 | 73.8 |
| Zm00001d016552_P002 | Maize | cytosol | 73.73 | 73.56 |
| Os02t0504500-01 | Rice | plasma membrane | 73.25 | 73.43 |
| GSMUA_Achr6P20930_001 | Banana | nucleus | 51.81 | 70.96 |
| CDX89783 | Canola | cytosol | 15.18 | 69.23 |
| Zm00001d050551_P007 | Maize | cytosol | 72.77 | 67.41 |
| GSMUA_Achr11P... | Banana | mitochondrion | 32.29 | 55.83 |
| GSMUA_Achr11P... | Banana | cytosol | 13.49 | 54.37 |
| CDX86285 | Canola | nucleus | 42.65 | 42.96 |
| Zm00001d049805_P001 | Maize | cytosol | 33.25 | 42.59 |
| EES14200 | Sorghum | cytosol | 35.66 | 42.53 |
| TraesCS7D01G258300.1 | Wheat | cytosol | 35.66 | 42.53 |
| TraesCS7B01G154400.1 | Wheat | cytosol | 35.18 | 42.07 |
| CDX85358 | Canola | cytosol | 42.65 | 41.65 |
| TraesCS7A01G257500.2 | Wheat | cytosol | 36.14 | 38.96 |
| PGSC0003DMT400067909 | Potato | nucleus | 21.93 | 37.14 |
| Os08t0526700-00 | Rice | plasma membrane | 16.63 | 35.38 |
| Solyc09g092040.2.1 | Tomato | cytosol | 20.96 | 35.08 |
Protein Annotations
| Gene3D:1.10.8.10 | Gene3D:1.20.58.2190 | MapMan:35.2 | GO:A0A078FRP2 | UniProt:A0A078FRP2 | EnsemblPlants:CDY15524 |
| ProteinID:CDY15524 | ProteinID:CDY15524.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00089697001 | InterPro:IPR013087 | InterPro:IPR015940 | PFAM:PF00627 | PFAM:PF09409 |
| ScanProsite:PS00028 | PFscan:PS50030 | PANTHER:PTHR13020 | PANTHER:PTHR13020:SF33 | InterPro:PUB-like_dom_sf | InterPro:PUB_domain |
| SMART:SM00165 | SMART:SM00580 | SUPFAM:SSF143503 | SUPFAM:SSF46934 | InterPro:UBA | InterPro:UBA-like_sf |
| UniParc:UPI0004EED1F3 | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
BnaA08g28080DBnaA08g28080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRP2]
Coordinates
chrLK032055:-:361600..364979
Molecular Weight (calculated)
46573.5 Da
IEP (calculated)
6.440
GRAVY (calculated)
-0.785
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVSLKCGD CGALLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCSK PCRSKTESDL HTKRTGHTEF VDKTMETVKP ISLEAPKAAA MEIDNIDGSS
101: GSGDASEVEM VVPGVDKNIL EELEGMGFPK ARATRALHYS GNASLEAAVN WVVEHENDPD VDEMPKVPAN SNSGPPKPAL TPEEVKIKAQ ELRERARKKK
201: EEEEKRMERE REKERIRIGK ELLEAKRIEE DNERKRIILL RKAEKEEERR AREKIRQKVE EDKAERRRKL GLPAEDPAAA KPSVPVVEEK KSSLPIRPAT
301: KTEKMRECLR SLKQAHKEDD AKVKRAFQTL LTYMGNVAKN PDEEKFRKIR LTNQTFQERV GSLRGGIEFM ELCGFEKMEG GEFLFLPRDK IDPAVINSAG
401: TELNSAINNP FFGVL
101: GSGDASEVEM VVPGVDKNIL EELEGMGFPK ARATRALHYS GNASLEAAVN WVVEHENDPD VDEMPKVPAN SNSGPPKPAL TPEEVKIKAQ ELRERARKKK
201: EEEEKRMERE REKERIRIGK ELLEAKRIEE DNERKRIILL RKAEKEEERR AREKIRQKVE EDKAERRRKL GLPAEDPAAA KPSVPVVEEK KSSLPIRPAT
301: KTEKMRECLR SLKQAHKEDD AKVKRAFQTL LTYMGNVAKN PDEEKFRKIR LTNQTFQERV GSLRGGIEFM ELCGFEKMEG GEFLFLPRDK IDPAVINSAG
401: TELNSAINNP FFGVL
001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
Arabidopsis Description
F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.