Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04850.1 | CDX68161 | AT1G74890.1 | 18642946 |
| AT1G04850.1 | CDX73122 | AT1G74890.1 | 18642946 |
| AT1G04850.1 | CDX85860 | AT1G74890.1 | 18642946 |
| AT1G04850.1 | CDY45402 | AT1G74890.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15524 | Canola | nucleus | 95.18 | 95.18 |
| CDX86603 | Canola | nucleus | 90.6 | 92.16 |
| AT1G04850.1 | Thale cress | cytosol | 91.08 | 91.53 |
| VIT_05s0029g01370.t01 | Wine grape | nucleus | 80.0 | 80.39 |
| KRH42800 | Soybean | endoplasmic reticulum | 80.24 | 80.24 |
| KRH58887 | Soybean | endoplasmic reticulum | 78.55 | 78.55 |
| GSMUA_Achr6P20940_001 | Banana | cytosol | 23.61 | 77.17 |
| Solyc12g098420.1.1 | Tomato | cytosol | 77.11 | 76.74 |
| PGSC0003DMT400011617 | Potato | nucleus | 76.63 | 76.08 |
| EES05114 | Sorghum | cytosol | 73.73 | 73.56 |
| TraesCS6B01G119800.1 | Wheat | cytosol | 72.77 | 73.48 |
| HORVU6Hr1G016460.1 | Barley | nucleus | 72.77 | 73.48 |
| TraesCS6A01G091500.1 | Wheat | nucleus | 72.77 | 73.48 |
| Zm00001d016552_P002 | Maize | cytosol | 73.49 | 73.32 |
| TraesCS6D01G080400.1 | Wheat | nucleus | 72.53 | 73.24 |
| Os02t0504500-01 | Rice | plasma membrane | 72.53 | 72.71 |
| GSMUA_Achr6P20930_001 | Banana | nucleus | 51.08 | 69.97 |
| CDX89783 | Canola | cytosol | 15.18 | 69.23 |
| Zm00001d050551_P007 | Maize | cytosol | 72.29 | 66.96 |
| GSMUA_Achr11P... | Banana | mitochondrion | 31.57 | 54.58 |
| GSMUA_Achr11P... | Banana | cytosol | 13.01 | 52.43 |
| Zm00001d049805_P001 | Maize | cytosol | 33.73 | 43.21 |
| TraesCS7D01G258300.1 | Wheat | cytosol | 36.14 | 43.1 |
| EES14200 | Sorghum | cytosol | 36.14 | 43.1 |
| CDX86285 | Canola | nucleus | 42.41 | 42.72 |
| TraesCS7B01G154400.1 | Wheat | cytosol | 35.66 | 42.65 |
| CDX85358 | Canola | cytosol | 42.41 | 41.41 |
| TraesCS7A01G257500.2 | Wheat | cytosol | 36.63 | 39.48 |
| PGSC0003DMT400067909 | Potato | nucleus | 22.17 | 37.55 |
| Solyc09g092040.2.1 | Tomato | cytosol | 20.72 | 34.68 |
| Os08t0526700-00 | Rice | plasma membrane | 16.14 | 34.36 |
Protein Annotations
| Gene3D:1.10.8.10 | Gene3D:1.20.58.2190 | MapMan:35.2 | GO:A0A078FUY8 | UniProt:A0A078FUY8 | EnsemblPlants:CDY18265 |
| ProteinID:CDY18265 | ProteinID:CDY18265.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00002800001 | InterPro:IPR013087 | InterPro:IPR015940 | PFAM:PF00627 | PFAM:PF09409 |
| ScanProsite:PS00028 | PFscan:PS50030 | PANTHER:PTHR13020 | PANTHER:PTHR13020:SF33 | InterPro:PUB-like_dom_sf | InterPro:PUB_domain |
| SMART:SM00165 | SMART:SM00580 | SUPFAM:SSF143503 | SUPFAM:SSF46934 | InterPro:UBA | InterPro:UBA-like_sf |
| UniParc:UPI0004EB4961 | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
BnaC05g02880DBnaC05g02880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUY8]
Coordinates
chrLK032083:-:590096..593288
Molecular Weight (calculated)
46628.5 Da
IEP (calculated)
6.239
GRAVY (calculated)
-0.812
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVSLKCGD CGALLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTACSK PCRSKTESDL HTKRTGHTEF VDKTTETVKP ISLEAAPKQP AMEIDNADGS
101: SGSGDAAEEM VVPEVDQKIL EELEGMGFPK ARATRALHYS GNASLEAAVN WVVEHENDPD VDEFPKVPAN SKVGPPKPAL TPEEVKMKAQ ELKERARKKK
201: EEEEKRMERE REKERIRIGK ELLEAKRMEE DNERKRIILL RKAEKEEERR AREKIRQKVE EDKAERRRKL GLPAEDPAAA KPSVPVVEEK KSSLPIRPAT
301: KTEQMRECLR SLKQAHKEDD AKVKRAFQTL LTYLGNVAKN PDEEKFRKIR LTNQTFQDRV GSLRGGIEFM ELCGFEKMEG GEFLFLPRDK IDPAIINSAG
401: TELNSAINNP FFGVL
101: SGSGDAAEEM VVPEVDQKIL EELEGMGFPK ARATRALHYS GNASLEAAVN WVVEHENDPD VDEFPKVPAN SKVGPPKPAL TPEEVKMKAQ ELKERARKKK
201: EEEEKRMERE REKERIRIGK ELLEAKRMEE DNERKRIILL RKAEKEEERR AREKIRQKVE EDKAERRRKL GLPAEDPAAA KPSVPVVEEK KSSLPIRPAT
301: KTEQMRECLR SLKQAHKEDD AKVKRAFQTL LTYLGNVAKN PDEEKFRKIR LTNQTFQDRV GSLRGGIEFM ELCGFEKMEG GEFLFLPRDK IDPAIINSAG
401: TELNSAINNP FFGVL
001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
Arabidopsis Description
F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.