Factsheet for VIT_05s0029g01370.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04850.1	VIT_17s0000g07580.t01	AT1G74890.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P20940_001	Banana	cytosol	25.42	82.68
KRH42800	Soybean	endoplasmic reticulum	82.32	81.93
KRH58887	Soybean	endoplasmic reticulum	81.84	81.45
CDX86603	Canola	nucleus	80.39	81.37
CDY15524	Canola	nucleus	81.11	80.72
Bra030592.1-P	Field mustard	nucleus	80.87	80.68
AT1G04850.1	Thale cress	cytosol	80.39	80.39
CDY18265	Canola	nucleus	80.39	80.0
Os02t0504500-01	Rice	plasma membrane	75.06	74.88
Solyc12g098420.1.1	Tomato	cytosol	75.54	74.82
EES05114	Sorghum	cytosol	75.06	74.52
PGSC0003DMT400011617	Potato	nucleus	75.3	74.4
HORVU6Hr1G016460.1	Barley	nucleus	73.61	73.97
TraesCS6B01G119800.1	Wheat	cytosol	73.37	73.72
Zm00001d016552_P002	Maize	cytosol	74.09	73.56
TraesCS6A01G091500.1	Wheat	nucleus	72.88	73.24
TraesCS6D01G080400.1	Wheat	nucleus	72.64	72.99
GSMUA_Achr6P20930_001	Banana	nucleus	53.51	72.94
VIT_07s0185g00030.t01	Wine grape	cytosol	51.57	69.38
Zm00001d050551_P007	Maize	cytosol	73.37	67.63
GSMUA_Achr11P...	Banana	mitochondrion	34.62	59.58
GSMUA_Achr11P...	Banana	cytosol	14.04	56.31
Zm00001d049805_P001	Maize	cytosol	34.62	44.14
EES14200	Sorghum	cytosol	37.05	43.97
TraesCS7D01G258300.1	Wheat	cytosol	36.56	43.39
TraesCS7B01G154400.1	Wheat	cytosol	36.32	43.23
TraesCS7A01G257500.2	Wheat	cytosol	37.05	39.74
PGSC0003DMT400067909	Potato	nucleus	22.03	37.14
Os08t0526700-00	Rice	plasma membrane	17.19	36.41
Solyc09g092040.2.1	Tomato	cytosol	20.58	34.27

Protein Annotations

Gene3D:1.10.8.10	Gene3D:1.20.58.2190	EntrezGene:100248761	wikigene:100248761	MapMan:35.2	ProteinID:CBI17214
ProteinID:CBI17214.3	ncoils:Coil	UniProt:D7SNI5	EMBL:FN594958	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	InterPro:IPR013087	InterPro:IPR015940	EntrezGene:LOC100248761	wikigene:LOC100248761	PFAM:PF00627
PFAM:PF09409	ScanProsite:PS00028	PFscan:PS50030	PANTHER:PTHR13020	PANTHER:PTHR13020:SF33	InterPro:PUB-like_dom_sf
InterPro:PUB_domain	SMART:SM00165	SMART:SM00580	SUPFAM:SSF143503	SUPFAM:SSF46934	TIGR:TC52877
TIGR:TC68316	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00015CBB09	ArrayExpress:VIT_05s0029g01370	EnsemblPlantsGene:VIT_05s0029g01370
EnsemblPlants:VIT_05s0029g01370.t01	unigene:Vvi.7922	RefSeq:XP_002273725	RefSeq:XP_002273725.1	InterPro:Znf_C2H2_type	SEG:seg

Description

No Description!

Coordinates

chr5:-:17396500..17430504

Molecular Weight (calculated)

46610.6 Da

IEP (calculated)

6.174

GRAVY (calculated)

-0.750

Length

413 amino acids

Sequence
(BLAST)

001: MAGVSLKCGD CGALLKSVEE AQEHAELTSH SNFSESTEAV LNLICTICSK PCRSKTESDL HTKRTGHTEF VDKTSEAAKP ISLEVPKATD ESQEVVDASG
101: SSSQPQEMIA PEVDKKLLEE LEAMGFPTAR ATRALHYSGN TSLEAAVNWV VEHENDSDID EMPLVPVNTK VEAPKPSLTP EEMKIKAQEL RERARKKKEE
201: EDKRMEREKE KERIRVGKEL LEAKRIEEEN ERKRILALRR AEKEEEQRAR EKIRQKLEED KAERRRKLGL PPEDPAAVKP SASVVQEKKT FLPVKPVTKV
301: EQMRECLRSL KQNHKDEDAK VKRAFHTLLT YIGNVAKNPD EEKFRKIRLT NPSFQERVGG LKGGIEFLEL CGFEKIEGGE FLFLPRDKVE MAVLNSAGSE
401: LNSAIVNPFF GVL

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.