CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04850.1	KRH03376	AT1G74890.1	18642946
AT1G04850.1	KRH54462	AT1G74890.1	18642946
AT1G04850.1	KRH57009	AT1G74890.1	18642946
AT1G04850.1	KRH63457	AT1G74890.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58887	Soybean	endoplasmic reticulum	95.9	95.9
VIT_05s0029g01370.t01	Wine grape	nucleus	81.93	82.32
CDY18265	Canola	nucleus	80.24	80.24
CDY15524	Canola	nucleus	80.0	80.0
Bra030592.1-P	Field mustard	nucleus	79.76	79.95
CDX86603	Canola	nucleus	78.55	79.9
AT1G04850.1	Thale cress	cytosol	79.04	79.42
GSMUA_Achr6P20940_001	Banana	cytosol	23.61	77.17
Solyc12g098420.1.1	Tomato	cytosol	75.18	74.82
PGSC0003DMT400011617	Potato	nucleus	75.18	74.64
EES05114	Sorghum	cytosol	72.53	72.36
Os02t0504500-01	Rice	plasma membrane	72.05	72.22
HORVU6Hr1G016460.1	Barley	nucleus	71.08	71.78
TraesCS6B01G119800.1	Wheat	cytosol	71.08	71.78
Zm00001d016552_P002	Maize	cytosol	71.81	71.63
TraesCS6D01G080400.1	Wheat	nucleus	70.84	71.53
TraesCS6A01G091500.1	Wheat	nucleus	70.84	71.53
GSMUA_Achr6P20930_001	Banana	nucleus	51.57	70.63
Zm00001d050551_P007	Maize	cytosol	70.6	65.4
KRH07644	Soybean	cytosol	46.27	61.94
GSMUA_Achr11P...	Banana	mitochondrion	33.01	57.08
GSMUA_Achr11P...	Banana	cytosol	13.98	56.31
EES14200	Sorghum	cytosol	37.59	44.83
Zm00001d049805_P001	Maize	cytosol	34.46	44.14
TraesCS7D01G258300.1	Wheat	cytosol	36.87	43.97
TraesCS7B01G154400.1	Wheat	cytosol	36.39	43.52
TraesCS7A01G257500.2	Wheat	cytosol	37.59	40.52
PGSC0003DMT400067909	Potato	nucleus	21.2	35.92
Os08t0526700-00	Rice	plasma membrane	16.63	35.38
Solyc09g092040.2.1	Tomato	cytosol	20.0	33.47

Protein Annotations

Gene3D:1.10.8.10	Gene3D:1.20.58.2190	EntrezGene:100794687	MapMan:35.2	EMBL:ACUP02004832	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G112000	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	UniProt:I1KS98
InterPro:IPR013087	InterPro:IPR015940	EnsemblPlants:KRH42800	ProteinID:KRH42800	ProteinID:KRH42800.1	PFAM:PF00627
PFAM:PF09409	ScanProsite:PS00028	PFscan:PS50030	PANTHER:PTHR13020	PANTHER:PTHR13020:SF33	InterPro:PUB-like_dom_sf
InterPro:PUB_domain	SMART:SM00165	SMART:SM00580	SUPFAM:SSF143503	SUPFAM:SSF46934	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0002338F5D	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:8623219..8629763

Molecular Weight (calculated)

46757.4 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.842

Length

415 amino acids

Sequence
(BLAST)

001: MAGVSLKCGD CGALLRTVEE AQEHAELTSH SNFSESTEPV LNLICTACSK PCRSKTESDL HTKRTGHTEF VDKTSEAVKP ISLEAPKVDA TASSENPSAA
101: ASTDQNEEMV VPEVDKKLLE ELESMGFSTA RATRALHYSG NAGLESAVNW IVEHENDPDI DQMPLVPTNT KIEAPKPSLT PEELKAKQQE LRERARKKKE
201: EEEKRMERER EKERIRIGKE LLEAKRIEAD NERKRLLALR KAEKEEEKSA REKIKQKLEE DKAERRRRLG LPPEEPSAAK PSPAPVVEEK KSFVPVRPAT
301: KAEQMRECLR SLKQNHKEDD ARVKRAFQTL LTYVGNVARN PDEEKFRKIR LSNQSFQDRV GSLRGGIEFL ENCGFEKIDG GEFLFLPRDK IEMAVLNSAG
401: SELDSAIKNP FFGVL

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.