Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g113720.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04850.1 | Solyc03g113720.2.1 | AT1G74890.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011617 | Potato | nucleus | 97.36 | 97.13 |
| CDX86603 | Canola | nucleus | 75.78 | 77.45 |
| CDY15524 | Canola | nucleus | 76.98 | 77.35 |
| Bra030592.1-P | Field mustard | nucleus | 76.74 | 77.29 |
| CDY18265 | Canola | nucleus | 76.74 | 77.11 |
| VIT_05s0029g01370.t01 | Wine grape | nucleus | 74.82 | 75.54 |
| KRH42800 | Soybean | endoplasmic reticulum | 74.82 | 75.18 |
| AT1G04850.1 | Thale cress | cytosol | 74.1 | 74.82 |
| GSMUA_Achr6P20940_001 | Banana | cytosol | 22.78 | 74.8 |
| KRH58887 | Soybean | endoplasmic reticulum | 73.62 | 73.98 |
| EES05114 | Sorghum | cytosol | 71.46 | 71.63 |
| Os02t0504500-01 | Rice | plasma membrane | 70.98 | 71.5 |
| HORVU6Hr1G016460.1 | Barley | nucleus | 70.02 | 71.05 |
| Zm00001d016552_P002 | Maize | cytosol | 70.74 | 70.91 |
| TraesCS6B01G119800.1 | Wheat | cytosol | 69.54 | 70.56 |
| TraesCS6D01G080400.1 | Wheat | nucleus | 69.3 | 70.32 |
| TraesCS6A01G091500.1 | Wheat | nucleus | 69.3 | 70.32 |
| GSMUA_Achr6P20930_001 | Banana | nucleus | 50.6 | 69.64 |
| Zm00001d050551_P007 | Maize | cytosol | 70.26 | 65.4 |
| GSMUA_Achr11P... | Banana | mitochondrion | 31.65 | 55.0 |
| GSMUA_Achr11P... | Banana | cytosol | 12.47 | 50.49 |
| Solyc09g059630.1.1 | Tomato | endoplasmic reticulum, extracellular | 39.09 | 48.08 |
| EES14200 | Sorghum | cytosol | 35.49 | 42.53 |
| Zm00001d049805_P001 | Maize | cytosol | 32.37 | 41.67 |
| TraesCS7D01G258300.1 | Wheat | cytosol | 34.53 | 41.38 |
| TraesCS7B01G154400.1 | Wheat | cytosol | 34.29 | 41.21 |
| TraesCS7A01G257500.2 | Wheat | cytosol | 35.25 | 38.18 |
| Solyc09g092040.2.1 | Tomato | cytosol | 22.3 | 37.5 |
| Os08t0526700-00 | Rice | plasma membrane | 17.03 | 36.41 |
Protein Annotations
| Gene3D:1.10.8.10 | Gene3D:1.20.58.2190 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR013087 | InterPro:IPR015940 | UniProt:K4DHL5 | PFAM:PF00627 |
| PFAM:PF09409 | ScanProsite:PS00028 | PFscan:PS50030 | PANTHER:PTHR13020 | PANTHER:PTHR13020:SF34 | InterPro:PUB-like_dom_sf |
| InterPro:PUB_domain | SMART:SM00580 | SUPFAM:SSF143503 | SUPFAM:SSF46934 | EnsemblPlantsGene:Solyc12g098420.1 | EnsemblPlants:Solyc12g098420.1.1 |
| InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI000276A1F3 | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
No Description!
Coordinates
chr12:+:65926794..65932530
Molecular Weight (calculated)
46878.5 Da
IEP (calculated)
6.287
GRAVY (calculated)
-0.809
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGVSLQCGD CGTLFKSVAE AQEHAEVTSH ANFSESTEAV LNLVCTACGK PCRSKTESDL HTKRTGHIEF TDKTAEGVKP ISLEVPKAKA DDEDMAEVGD
101: DSGTGQHEEM VVPEVDQNLL SELETMGFSK ARAIRALHFS GNASLEAAVN WVVEHESDPD IDETPMVPAS AKKGEAPRPS LTPEEIKIKQ LELRERARKK
201: KEEEERQRER EREKERIRIG KELLEAKRIE EDNERKRIIA LRKAEKAEEQ RAREKIRQKL EEDKAERRRK LGLPAEDPAS PKPSTPVVEE KKSSFLPVRP
301: ATKAERMREC LRTLKQTHKD DEAKVKTAFN TLLTYAKNVA TNPNEEKFRK IRLSNAAFQD RIGKLQGGIE FLEHCGFEKV EGGEFLYLPR EKVDIAVLNS
401: AGTELNNAIK NPFFGVL
101: DSGTGQHEEM VVPEVDQNLL SELETMGFSK ARAIRALHFS GNASLEAAVN WVVEHESDPD IDETPMVPAS AKKGEAPRPS LTPEEIKIKQ LELRERARKK
201: KEEEERQRER EREKERIRIG KELLEAKRIE EDNERKRIIA LRKAEKAEEQ RAREKIRQKL EEDKAERRRK LGLPAEDPAS PKPSTPVVEE KKSSFLPVRP
301: ATKAERMREC LRTLKQTHKD DEAKVKTAFN TLLTYAKNVA TNPNEEKFRK IRLSNAAFQD RIGKLQGGIE FLEHCGFEKV EGGEFLYLPR EKVDIAVLNS
401: AGTELNNAIK NPFFGVL
001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
Arabidopsis Description
F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.