Factsheet for Zm00001d016552_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05114	Sorghum	cytosol	96.39	96.39
Os02t0504500-01	Rice	plasma membrane	90.38	90.82
Zm00001d050551_P007	Maize	cytosol	93.51	86.83
HORVU6Hr1G016460.1	Barley	nucleus	84.86	85.89
TraesCS6B01G119800.1	Wheat	cytosol	84.86	85.89
TraesCS6A01G091500.1	Wheat	nucleus	84.62	85.64
TraesCS6D01G080400.1	Wheat	nucleus	84.38	85.4
GSMUA_Achr6P20940_001	Banana	cytosol	24.28	79.53
VIT_05s0029g01370.t01	Wine grape	nucleus	73.56	74.09
CDX86603	Canola	nucleus	72.6	74.02
CDY15524	Canola	nucleus	73.56	73.73
Bra030592.1-P	Field mustard	nucleus	73.32	73.67
CDY18265	Canola	nucleus	73.32	73.49
AT1G04850.1	Thale cress	cytosol	72.6	73.12
KRH58887	Soybean	endoplasmic reticulum	72.36	72.53
KRH42800	Soybean	endoplasmic reticulum	71.63	71.81
Solyc12g098420.1.1	Tomato	cytosol	70.91	70.74
PGSC0003DMT400011617	Potato	nucleus	70.67	70.33
GSMUA_Achr11P...	Banana	mitochondrion	33.65	58.33
Zm00001d049805_P001	Maize	cytosol	32.69	41.98
PGSC0003DMT400067909	Potato	nucleus	20.91	35.51
Solyc09g092040.2.1	Tomato	cytosol	19.71	33.06

Protein Annotations

Gene3D:1.10.8.10	Gene3D:1.20.58.2190	MapMan:35.2	UniProt:A0A1D6H8V0	ProteinID:AQK71146.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR013087	InterPro:IPR015940
PFAM:PF09409	ScanProsite:PS00028	PFscan:PS50030	PANTHER:PTHR13020	PANTHER:PTHR13020:SF34	InterPro:PUB-like_dom_sf
InterPro:PUB_domain	SMART:SM00165	SMART:SM00580	SUPFAM:SSF143503	SUPFAM:SSF46934	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0002218B73	EnsemblPlantsGene:Zm00001d016552	EnsemblPlants:Zm00001d016552_P002	EnsemblPlants:Zm00001d016552_T002	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

ubiquitin-associated (UBA)/TS-N domain-containing protein

Coordinates

chr5:+:167108714..167128091

Molecular Weight (calculated)

46877.4 Da

IEP (calculated)

5.511

GRAVY (calculated)

-0.839

Length

416 amino acids

Sequence
(BLAST)

001: MAGLSLRCGD CGAQLRSVEE AQAHAESTNH ANFVESTEAV LNLVCSNCGK PCRSHTEVDL HTKRTGHTEF ADKTAEAAKP IDLEAPLKPA SDDATDVDAS
101: ASATEETQET VVPEVNKEVL TDLEGMGFST ARATRALHFS GNSTIECAIN WLSEHQEDAD IDEMPLVPAN SKTEVNKPSL TPEEMKIKAQ ELRERARKKK
201: EEEERRMERE REKERVRIGK ELLEAKRIEE QNERKRMIEL RRLEKEEEKR AREKIRQKLE EDKAERRRKL GLPPEDPAAA KPSAPPPVEE KKSALPVRPA
301: TKAERMRDCL RNLKQQNKDD DAKVKRAFQT LLTYIGNVAK NPDEEKFRKI RLTNATFQER VGNLHGGIEF LELCGFEKLE GDEFLFLARE KVDSAILNTA
401: GAELNSAITN PFFGVL

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.