Factsheet for Solyc09g092040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04850.1	Solyc03g113720.2.1	AT1G74890.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067909	Potato	nucleus	72.98	73.88
GSMUA_Achr6P20940_001	Banana	cytosol	22.98	44.88
GSMUA_Achr11P...	Banana	mitochondrion	28.23	29.17
Solyc12g098420.1.1	Tomato	cytosol	37.5	22.3
Solyc09g059630.1.1	Tomato	endoplasmic reticulum, extracellular	29.03	21.24
CDX86603	Canola	nucleus	34.68	21.08
Bra030592.1-P	Field mustard	nucleus	35.08	21.01
CDY15524	Canola	nucleus	35.08	20.96
CDY18265	Canola	nucleus	34.68	20.72
VIT_05s0029g01370.t01	Wine grape	nucleus	34.27	20.58
AT1G04850.1	Thale cress	cytosol	34.27	20.58
Zm00001d049805_P001	Maize	cytosol	26.61	20.37
TraesCS7B01G154400.1	Wheat	cytosol	28.23	20.17
KRH42800	Soybean	endoplasmic reticulum	33.47	20.0
KRH58887	Soybean	endoplasmic reticulum	33.06	19.76
Zm00001d016552_P002	Maize	cytosol	33.06	19.71
TraesCS7D01G258300.1	Wheat	cytosol	27.42	19.54
EES05114	Sorghum	cytosol	32.66	19.47
EES14200	Sorghum	cytosol	27.02	19.25
HORVU6Hr1G016460.1	Barley	nucleus	31.85	19.22
TraesCS6A01G091500.1	Wheat	nucleus	31.85	19.22
Os02t0504500-01	Rice	plasma membrane	31.85	19.08
TraesCS6D01G080400.1	Wheat	nucleus	31.45	18.98
TraesCS6B01G119800.1	Wheat	cytosol	31.45	18.98
TraesCS7A01G257500.2	Wheat	cytosol	28.23	18.18
Zm00001d050551_P007	Maize	cytosol	31.85	17.63
Os08t0526700-00	Rice	plasma membrane	8.06	10.26
GSMUA_Achr6P20930_001	Banana	nucleus	10.48	8.58
GSMUA_Achr11P...	Banana	cytosol	3.23	7.77

Protein Annotations

EnsemblPlants:Solyc09g092040.2.1	EnsemblPlantsGene:Solyc09g092040.2	Gene3D:1.20.58.2190	InterPro:PUB-like_dom_sf	InterPro:PUB_domain	PANTHER:PTHR13020
PANTHER:PTHR13020:SF33	PFAM:PF09409	SEG:seg	SMART:SM00580	SUPFAM:SSF143503	UniParc:UPI000276B79A
UniProt:K4CWN0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr9:+:71210424..71215329

Molecular Weight (calculated)

27852.8 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.518

Length

248 amino acids

Sequence
(BLAST)

001: MAATNILLQC GDRGTLLGSA AEAQQHAQEF CHTNYYESQE AIRFIVCYNC GHKCSCETES VIHSRKSGHT EFYDRTAEVT EEAARRNRAN IRQMLRVAID
101: RLDEADTSEG ARRQQQQQLG LPSRPVLQEG QSSLTLAAKV EQMAECLRTI QQNSMDDAAK VMQAFNSLRM FVRNIATNPD EEKYRKIRIS NTAFQARVGH
201: LRGGIEFLEV CGFERTIGGE HLYMQRENVD SDVLYAAANV LNNAIGNA

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.