Factsheet for GSMUA_Achr6P20930_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0029g01370.t01	Wine grape	nucleus	72.94	53.51
GSMUA_Achr11P...	Banana	cytosol	17.82	52.43
CDX86603	Canola	nucleus	69.97	51.96
Bra030592.1-P	Field mustard	nucleus	70.96	51.93
CDY15524	Canola	nucleus	70.96	51.81
KRH42800	Soybean	endoplasmic reticulum	70.63	51.57
AT1G04850.1	Thale cress	cytosol	69.97	51.33
CDY18265	Canola	nucleus	69.97	51.08
KRH58887	Soybean	endoplasmic reticulum	69.97	51.08
Solyc12g098420.1.1	Tomato	cytosol	69.64	50.6
PGSC0003DMT400011617	Potato	nucleus	69.64	50.48
GSMUA_Achr11P...	Banana	mitochondrion	18.48	23.33
PGSC0003DMT400067909	Potato	nucleus	9.24	11.43
Solyc09g092040.2.1	Tomato	cytosol	8.58	10.48
GSMUA_Achr6P20940_001	Banana	cytosol	2.64	6.3

Protein Annotations

Gene3D:1.10.8.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
EnsemblPlantsGene:GSMUA_Achr6G20930_001	EnsemblPlants:GSMUA_Achr6P20930_001	EnsemblPlants:GSMUA_Achr6T20930_001	InterPro:IPR013087	InterPro:IPR015940	UniProt:M0T8U1
PFAM:PF00627	ScanProsite:PS00028	PFscan:PS50030	PANTHER:PTHR13020	PANTHER:PTHR13020:SF34	SMART:SM00165
SUPFAM:SSF46934	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00029659CE	InterPro:Znf_C2H2_type	SEG:seg

Description

ZOS2-07 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G20930_001]

Coordinates

chr6:+:16214525..16239429

Molecular Weight (calculated)

34107.2 Da

IEP (calculated)

5.213

GRAVY (calculated)

-0.963

Length

303 amino acids

Sequence
(BLAST)

001: MAGLSLRCGD CGALLKSVEE AQEHAELTKH SNFSESTEAV LNLVCATCGK PCRSRTETDL HTKRTGHADF DDRTLEAAKP IELEAAPKAA AASGESAGDE
101: SSQPEEMVVP EVDSDLLGQL ESMGFPTARA TRALHYSGNS SIEAAINWVA EHEDDPDIDQ MPLIPKDKMT EANKPSLTPE EIKMKAEELR ERARKKKEEE
201: ERKTEREREK ERIRIGKELL EAKRIEEENE RKRILALRKA EKEEEQRARE KIRQKLEEDK AERRRKLGLP PEDPVSSKPS AAPEEQKKAL IISNKFVYSV
301: LTK

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.