Factsheet for Bra030592.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003782.1-P
Bra015885.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04850.1	Bra003782.1-P	AT1G74890.1	18642946
AT1G04850.1	Bra015885.1-P	AT1G74890.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15524	Canola	nucleus	99.76	99.52
AT1G04850.1	Thale cress	cytosol	91.55	91.77
VIT_05s0029g01370.t01	Wine grape	nucleus	80.68	80.87
KRH42800	Soybean	endoplasmic reticulum	79.95	79.76
KRH58887	Soybean	endoplasmic reticulum	78.5	78.31
Solyc12g098420.1.1	Tomato	cytosol	77.29	76.74
GSMUA_Achr6P20940_001	Banana	cytosol	23.43	76.38
PGSC0003DMT400011617	Potato	nucleus	76.57	75.84
HORVU6Hr1G016460.1	Barley	nucleus	73.67	74.21
TraesCS6B01G119800.1	Wheat	cytosol	73.43	73.97
TraesCS6A01G091500.1	Wheat	nucleus	73.43	73.97
TraesCS6D01G080400.1	Wheat	nucleus	73.19	73.72
EES05114	Sorghum	cytosol	73.91	73.56
Zm00001d016552_P002	Maize	cytosol	73.67	73.32
Os02t0504500-01	Rice	plasma membrane	73.19	73.19
GSMUA_Achr6P20930_001	Banana	nucleus	51.93	70.96
Zm00001d050551_P007	Maize	cytosol	72.71	67.19
GSMUA_Achr11P...	Banana	mitochondrion	32.13	55.42
GSMUA_Achr11P...	Banana	cytosol	13.53	54.37
Bra037466.1-P	Field mustard	nucleus	42.27	42.37
Zm00001d049805_P001	Maize	cytosol	33.09	42.28
TraesCS7D01G258300.1	Wheat	cytosol	35.51	42.24
EES14200	Sorghum	cytosol	35.51	42.24
TraesCS7B01G154400.1	Wheat	cytosol	35.02	41.79
TraesCS7A01G257500.2	Wheat	cytosol	35.99	38.7
PGSC0003DMT400067909	Potato	nucleus	21.98	37.14
Os08t0526700-00	Rice	plasma membrane	16.67	35.38
Solyc09g092040.2.1	Tomato	cytosol	21.01	35.08

Protein Annotations

Gene3D:1.10.8.10	Gene3D:1.20.58.2190	MapMan:35.2	EnsemblPlantsGene:Bra030592	EnsemblPlants:Bra030592.1	EnsemblPlants:Bra030592.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR013087	InterPro:IPR015940
UniProt:M4EP72	PFAM:PF00627	PFAM:PF09409	ScanProsite:PS00028	PFscan:PS50030	PANTHER:PTHR13020
PANTHER:PTHR13020:SF33	InterPro:PUB-like_dom_sf	InterPro:PUB_domain	SMART:SM00165	SMART:SM00580	SUPFAM:SSF143503
SUPFAM:SSF46934	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00025456E0	InterPro:Znf_C2H2_type	SEG:seg

Description

AT1G04850 (E=9e-180) | ubiquitin-associated (UBA)/TS-N domain-containing protein

Coordinates

chrA08:+:21182193..21185402

Molecular Weight (calculated)

46440.4 Da

IEP (calculated)

6.440

GRAVY (calculated)

-0.795

Length

414 amino acids

Sequence
(BLAST)

001: MAGVSLKCGD CGALLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCSK PCRSKTESDL HTKRTGHTEF VDKTMETVKP ISLEAPKAAA MEIDNIDGSS
101: GSGDASEEMV VPGVDKNILE ELEGMGFPKA RATRALHYSG NASLEAAVNW VVEHENDPDV DEMPKVPANS NSGPPKPALT PEEVKIKAQE LRERARKKKE
201: EEEKRMERER EKERIRIGKE LLEAKRIEED NERKRIILLR KAEKEEERRA REKIRQKVEE DKAERRRKLG LPAEDPAAAK PSVPVVEEKK SSLPIRPATK
301: TEKMRECLRS LKQAHKEDDA KVKRAFQTLL TYMGNVAKNP DEEKLRKIRL TNQTFQERVG SLRGGIEFME LCGFEKMEGG EFLFLPRDKI DPAVINSAGT
401: ELNSAINNPF FGVL

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.