CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016552_P002	Maize	cytosol	96.39	96.39
Os02t0504500-01	Rice	plasma membrane	93.27	93.72
Zm00001d050551_P007	Maize	cytosol	96.63	89.73
HORVU6Hr1G016460.1	Barley	nucleus	87.26	88.32
TraesCS6B01G119800.1	Wheat	cytosol	87.26	88.32
TraesCS6A01G091500.1	Wheat	nucleus	87.02	88.08
TraesCS6D01G080400.1	Wheat	nucleus	86.78	87.83
GSMUA_Achr6P20940_001	Banana	cytosol	24.52	80.31
VIT_05s0029g01370.t01	Wine grape	nucleus	74.52	75.06
CDX86603	Canola	nucleus	73.08	74.51
CDY15524	Canola	nucleus	73.8	73.98
Bra030592.1-P	Field mustard	nucleus	73.56	73.91
CDY18265	Canola	nucleus	73.56	73.73
KRH58887	Soybean	endoplasmic reticulum	73.08	73.25
AT1G04850.1	Thale cress	cytosol	72.6	73.12
KRH42800	Soybean	endoplasmic reticulum	72.36	72.53
PGSC0003DMT400011617	Potato	nucleus	71.88	71.53
Solyc12g098420.1.1	Tomato	cytosol	71.63	71.46
GSMUA_Achr11P...	Banana	mitochondrion	33.65	58.33
EES14200	Sorghum	cytosol	36.3	43.39
PGSC0003DMT400067909	Potato	nucleus	20.91	35.51
Solyc09g092040.2.1	Tomato	cytosol	19.47	32.66

Protein Annotations

Gene3D:1.10.8.10	Gene3D:1.20.58.2190	MapMan:35.2	EntrezGene:8056074	UniProt:C5XSJ7	ncoils:Coil
EnsemblPlants:EES05114	ProteinID:EES05114	ProteinID:EES05114.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	InterPro:IPR013087	InterPro:IPR015940	PFAM:PF00627	PFAM:PF09409	ScanProsite:PS00028
PFscan:PS50030	PANTHER:PTHR13020	PANTHER:PTHR13020:SF34	InterPro:PUB-like_dom_sf	InterPro:PUB_domain	SMART:SM00165
SMART:SM00580	EnsemblPlantsGene:SORBI_3004G153200	SUPFAM:SSF143503	SUPFAM:SSF46934	unigene:Sbi.11878	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0001A855F6	RefSeq:XP_002452138.1	InterPro:Znf_C2H2_type	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:48421407..48427225

Molecular Weight (calculated)

46863.6 Da

IEP (calculated)

5.670

GRAVY (calculated)

-0.835

Length

416 amino acids

Sequence
(BLAST)

001: MAGLSLRCGD CGAQLRSVEE AQAHAEATNH ANFVESTEAV LNLVCSDCGK PCRSQTEVDL HTKRTGHTEF ADKTAEAAKP IDLEAPLKPA SEDAMDVDAS
101: ASASAEPQEM VVPEVNKEML TDLEGMGFST ARATRALHFS GNSTIEGAIN WLSEHQEDAD IDEMPLVPAN SKTEANKPSL TPEEMKIKAQ ELRERARKKK
201: EEEERRMERE REKERIRIGK ELLEAKRIEE QNERKRMIEL RRLEKEEEKR AREKIRQKLE EDKAERRRKL GLPPEDPAAA KPSAPPPVEE KKSALPVRPA
301: TKAERMRDCL RNLKQQNKDD DAKVKRAFQT LLTYIGNVAK NPDEEKFRKI RLTNATFQER VGNLHGGIEF LELCGFEKLE GNEFLFLARE KVDKAILNTA
401: GAELNSAITN PFFGVL

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.