Factsheet for PGSC0003DMT400067909

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04850.1	PGSC0003DMT400063187	AT1G74890.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g092040.2.1	Tomato	cytosol	73.88	72.98
GSMUA_Achr6P20940_001	Banana	cytosol	24.08	46.46
GSMUA_Achr11P...	Banana	mitochondrion	28.98	29.58
PGSC0003DMT400069104	Potato	nucleus	30.61	24.67
PGSC0003DMT400011617	Potato	nucleus	39.18	22.97
CDY18265	Canola	nucleus	37.55	22.17
CDX86603	Canola	nucleus	36.73	22.06
VIT_05s0029g01370.t01	Wine grape	nucleus	37.14	22.03
Bra030592.1-P	Field mustard	nucleus	37.14	21.98
CDY15524	Canola	nucleus	37.14	21.93
AT1G04850.1	Thale cress	cytosol	36.33	21.55
TraesCS7B01G154400.1	Wheat	cytosol	30.2	21.33
TraesCS7D01G258300.1	Wheat	cytosol	30.2	21.26
KRH42800	Soybean	endoplasmic reticulum	35.92	21.2
KRH58887	Soybean	endoplasmic reticulum	35.92	21.2
TraesCS6D01G080400.1	Wheat	nucleus	35.1	20.92
Zm00001d016552_P002	Maize	cytosol	35.51	20.91
EES05114	Sorghum	cytosol	35.51	20.91
HORVU6Hr1G016460.1	Barley	nucleus	34.69	20.68
TraesCS6A01G091500.1	Wheat	nucleus	34.69	20.68
TraesCS6B01G119800.1	Wheat	cytosol	34.29	20.44
Os02t0504500-01	Rice	plasma membrane	34.29	20.29
EES14200	Sorghum	cytosol	28.16	19.83
Zm00001d049805_P001	Maize	cytosol	26.12	19.75
Zm00001d050551_P007	Maize	cytosol	34.69	18.97
TraesCS7A01G257500.2	Wheat	cytosol	28.98	18.44
Os08t0526700-00	Rice	plasma membrane	8.57	10.77
GSMUA_Achr6P20930_001	Banana	nucleus	11.43	9.24
GSMUA_Achr11P...	Banana	cytosol	3.67	8.74

Protein Annotations

Gene3D:1.20.58.2190	EntrezGene:102585107	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	UniProt:M1CI34	PFAM:PF09409	EnsemblPlantsGene:PGSC0003DMG400026411	PGSC:PGSC0003DMG400026411	EnsemblPlants:PGSC0003DMT400067909
ScanProsite:PS00028	PANTHER:PTHR13020	PANTHER:PTHR13020:SF33	InterPro:PUB-like_dom_sf	InterPro:PUB_domain	SMART:SM00580
SUPFAM:SSF143503	UniParc:UPI000294DB7C	RefSeq:XP_006360957.1	InterPro:Znf_C2H2_type	SEG:seg	:

Description

Ubiquitin-associated uba/ubx domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026411]

Coordinates

chr9:+:59119921..59123119

Molecular Weight (calculated)

27995.3 Da

IEP (calculated)

7.223

GRAVY (calculated)

-0.652

Length

245 amino acids

Sequence
(BLAST)

001: MAEGILLQCG DCGTLLKSAE KAEQHAKENW HTNFRESNEA FVYQVCKVCG KHCVCKTESA MHSKRSGHTE FYDRTAEVAE EEERRKRDNL RQILRVAIDH
101: LNEADTSLAA RRRQQLGLPS RPVLEEGQSS LPLAARAEQM AECLRTIQQN YMDDAAKVMK AFDSLHMFAR NITMYPDEEK YRKIRINNAA FQERVGHLRG
201: GIKFLELCGF ERTRGGEHLY MPREDVNMDV LYSASNVLNN AIGNP

Best Arabidopsis Sequence Match ( AT1G04850.1 )
(BLAST)

001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL

Arabidopsis Description

F13M7.16 protein [Source:UniProtKB/TrEMBL;Acc:Q9MAT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.