Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037466.1-P | Field mustard | nucleus | 96.6 | 96.37 |
| CDX85358 | Canola | cytosol | 87.86 | 85.18 |
| AT5G48690.1 | Thale cress | nucleus | 60.92 | 77.71 |
| VIT_07s0185g00030.t01 | Wine grape | cytosol | 39.08 | 52.44 |
| KRH07644 | Soybean | cytosol | 39.32 | 52.26 |
| PGSC0003DMT400069104 | Potato | nucleus | 35.92 | 48.68 |
| Solyc09g059630.1.1 | Tomato | endoplasmic reticulum, extracellular | 40.05 | 48.67 |
| CDX89783 | Canola | cytosol | 9.71 | 43.96 |
| CDX86603 | Canola | nucleus | 43.45 | 43.87 |
| CDY15524 | Canola | nucleus | 42.96 | 42.65 |
| CDY18265 | Canola | nucleus | 42.72 | 42.41 |
Protein Annotations
| Gene3D:1.10.8.10 | Gene3D:1.20.58.2190 | MapMan:19.2.2.2.1 | Gene3D:3.10.20.90 | EnsemblPlants:CDX86285 | ProteinID:CDX86285 |
| ProteinID:CDX86285.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00144397001 |
| InterPro:IPR015940 | PFAM:PF09409 | PFscan:PS50030 | PANTHER:PTHR13020 | PANTHER:PTHR13020:SF33 | InterPro:PUB-like_dom_sf |
| InterPro:PUB_domain | SMART:SM00580 | SUPFAM:SSF143503 | SUPFAM:SSF46934 | InterPro:UBA | InterPro:UBA-like_sf |
| UniParc:UPI0004EE9D59 | SEG:seg | : | : | : | : |
Description
BnaA06g30020D
Coordinates
chrLK031845:+:766717..769261
Molecular Weight (calculated)
47875.8 Da
IEP (calculated)
9.516
GRAVY (calculated)
-1.026
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKQNRESG STSVKKEEKK AKVESASTHV TLRFKGQDEE EIRVFRMRIE MRKVMKRYGE TRGVKWTTFV FILKDGTRIR ESHTPDERSK NMPAETAESD
101: VVEVNRGLLK ELEDMGFSMA RAAWALHHSG NSSLEEAVNW IVDHENDSQF DKAPVVEFNI EIESPSPHDD TSQARANELK ERARKLREEE ETKREREREK
201: ERIRAGKEMM EAKRIAEENE RKRNIALRKA EKDEEKKARE KVMLKVNADK AERKSRHGLP TEAESTSTST LVAPLDTKRI LMPSPSPVSK AEEMRECLRS
301: LRRNHKEEDP RTMRRAFETL LMIVRNAAKN PDEEKYRRIR VTNRLFQERV GRFKEGMEFM ELCGFTREEG SEFLSLSNHE GDLSRLRDAA FQLQSAVTNP
401: FFGLLSKEAA KE
101: VVEVNRGLLK ELEDMGFSMA RAAWALHHSG NSSLEEAVNW IVDHENDSQF DKAPVVEFNI EIESPSPHDD TSQARANELK ERARKLREEE ETKREREREK
201: ERIRAGKEMM EAKRIAEENE RKRNIALRKA EKDEEKKARE KVMLKVNADK AERKSRHGLP TEAESTSTST LVAPLDTKRI LMPSPSPVSK AEEMRECLRS
301: LRRNHKEEDP RTMRRAFETL LMIVRNAAKN PDEEKYRRIR VTNRLFQERV GRFKEGMEFM ELCGFTREEG SEFLSLSNHE GDLSRLRDAA FQLQSAVTNP
401: FFGLLSKEAA KE
001: MSDGTENAAI EVNHGLLKEL EDMGFSMARA AWALHHSGNS SLEAAVNWII DHENESQFEN MPLVEFNIEI ESPNPSDDTA ETSHARAKEL SEQARKLREE
101: QETKRERERE KERIRAGKEL METKRIAEEN ERKRNIALRK AEKDEEKKAR EKIMLKVNAD KLERKRRLGL PTETESASTS NPVSPLDPKR IVMSSPSVVS
201: KAEEMRECLR SLRRNHKDED PRITRRVFET LLTIVRNVAK KPDEERYRRI RLKNRLFHER VGRYKEGIEF MELCGFKRVE GSEFLSLSKR DSDINRLRDA
301: AFLLNSASAN PFFGLLSTEA ERP
101: QETKRERERE KERIRAGKEL METKRIAEEN ERKRNIALRK AEKDEEKKAR EKIMLKVNAD KLERKRRLGL PTETESASTS NPVSPLDPKR IVMSSPSVVS
201: KAEEMRECLR SLRRNHKDED PRITRRVFET LLTIVRNVAK KPDEERYRRI RLKNRLFHER VGRYKEGIEF MELCGFKRVE GSEFLSLSKR DSDINRLRDA
301: AFLLNSASAN PFFGLLSTEA ERP
Arabidopsis Description
Ubiquitin-associated (UBA)/TS-N domain protein [Source:UniProtKB/TrEMBL;Acc:Q5XV09]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.