Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86285 | Canola | nucleus | 77.71 | 60.92 |
| Bra037466.1-P | Field mustard | nucleus | 76.78 | 60.05 |
| CDX85358 | Canola | cytosol | 75.54 | 57.41 |
| KRH07644 | Soybean | cytosol | 51.08 | 53.23 |
| VIT_07s0185g00030.t01 | Wine grape | cytosol | 49.23 | 51.79 |
| PGSC0003DMT400069104 | Potato | nucleus | 44.89 | 47.7 |
| Solyc09g059630.1.1 | Tomato | endoplasmic reticulum, extracellular | 48.61 | 46.31 |
| AT1G04850.1 | Thale cress | cytosol | 50.15 | 39.23 |
Protein Annotations
| Gene3D:1.10.8.10 | Gene3D:1.20.58.2190 | MapMan:35.2 | EntrezGene:834927 | ProteinID:AED95711.1 | ArrayExpress:AT5G48690 |
| EnsemblPlantsGene:AT5G48690 | RefSeq:AT5G48690 | TAIR:AT5G48690 | RefSeq:AT5G48690-TAIR-G | EnsemblPlants:AT5G48690.1 | TAIR:AT5G48690.1 |
| EMBL:AY735713 | EMBL:AY924856 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR015940 | RefSeq:NP_199680.2 | PFAM:PF09409 | PFscan:PS50030 | PANTHER:PTHR13020 |
| PANTHER:PTHR13020:SF34 | InterPro:PUB-like_dom_sf | InterPro:PUB_domain | UniProt:Q5XV09 | SMART:SM00580 | SUPFAM:SSF143503 |
| SUPFAM:SSF46934 | InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI00004431E6 | SEG:seg | : |
Description
Ubiquitin-associated (UBA)/TS-N domain protein [Source:UniProtKB/TrEMBL;Acc:Q5XV09]
Coordinates
chr5:-:19747026..19749061
Molecular Weight (calculated)
37457.4 Da
IEP (calculated)
8.249
GRAVY (calculated)
-0.949
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDGTENAAI EVNHGLLKEL EDMGFSMARA AWALHHSGNS SLEAAVNWII DHENESQFEN MPLVEFNIEI ESPNPSDDTA ETSHARAKEL SEQARKLREE
101: QETKRERERE KERIRAGKEL METKRIAEEN ERKRNIALRK AEKDEEKKAR EKIMLKVNAD KLERKRRLGL PTETESASTS NPVSPLDPKR IVMSSPSVVS
201: KAEEMRECLR SLRRNHKDED PRITRRVFET LLTIVRNVAK KPDEERYRRI RLKNRLFHER VGRYKEGIEF MELCGFKRVE GSEFLSLSKR DSDINRLRDA
301: AFLLNSASAN PFFGLLSTEA ERP
101: QETKRERERE KERIRAGKEL METKRIAEEN ERKRNIALRK AEKDEEKKAR EKIMLKVNAD KLERKRRLGL PTETESASTS NPVSPLDPKR IVMSSPSVVS
201: KAEEMRECLR SLRRNHKDED PRITRRVFET LLTIVRNVAK KPDEERYRRI RLKNRLFHER VGRYKEGIEF MELCGFKRVE GSEFLSLSKR DSDINRLRDA
301: AFLLNSASAN PFFGLLSTEA ERP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.