CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24091
CDY25849
CDY45117
CDY60212

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62520.1	CDY24091	AT1G53510.1	21798944
AT5G62520.1	CDY25849	AT1G53510.1	21798944
AT5G62520.1	CDY45117	AT1G53510.1	21798944
AT5G62520.1	CDY60212	AT1G53510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010096.1-P	Field mustard	nucleus	100.0	100.0
CDY61348	Canola	nucleus	94.25	94.86
CDY70596	Canola	cytosol	73.16	75.58
AT5G62520.1	Thale cress	nucleus	69.65	70.55
CDY66230	Canola	extracellular, golgi	72.52	63.76
CDY30723	Canola	extracellular, golgi	72.2	63.48
VIT_17s0000g08370.t01	Wine grape	nucleus	39.94	36.34
KRH63531	Soybean	nucleus	38.02	36.06
KRH57070	Soybean	cytosol	37.06	35.47
KRH03292	Soybean	cytosol	36.42	33.93
CDY44157	Canola	cytoskeleton, cytosol, nucleus	32.91	33.44
CDY25790	Canola	cytoskeleton, cytosol, nucleus	32.91	33.12
CDY11593	Canola	nucleus	32.27	33.11
CDY51640	Canola	cytoskeleton, cytosol, nucleus	31.95	32.89
GSMUA_Achr5P03800_001	Banana	cytosol	17.57	32.35
CDY54287	Canola	nucleus	31.63	32.25
PGSC0003DMT400063250	Potato	nucleus	38.34	31.91
CDY57852	Canola	nucleus	31.31	31.61
Solyc03g114360.2.1	Tomato	nucleus	37.38	31.2
GSMUA_Achr4P27510_001	Banana	cytosol	26.52	28.82
CDY60257	Canola	cytosol	21.41	20.49
CDY32124	Canola	nucleus	24.6	14.53
CDX84199	Canola	cytosol, nucleus, plastid	22.36	14.2
CDY31694	Canola	nucleus	23.64	14.02
CDY22597	Canola	nucleus	23.96	13.79
CDY67026	Canola	nucleus	23.64	13.45
CDY43007	Canola	nucleus	23.64	12.74
CDY41739	Canola	cytosol	22.36	12.73

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	GO:A0A078EGR5	EnsemblPlants:CDY00302	ProteinID:CDY00302	ProteinID:CDY00302.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00109882001	InterPro:IPR012317
PFAM:PF12174	PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF6	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST
SUPFAM:SSF56399	UniParc:UPI000253F6E9	SEG:seg	:	:	:

Description

BnaA06g22030D

Coordinates

chrLK031917:+:890948..892517

Molecular Weight (calculated)

34878.8 Da

IEP (calculated)

8.459

GRAVY (calculated)

-0.395

Length

313 amino acids

Sequence
(BLAST)

001: MDYAGTEFQA SLDSEQEGST VSESGSCDSY EQPRPSFADE HGLMELLEGD KAYDLIYRNC KSGLGDQCQL LSILRNGFRT IGSRAKLKTF QVFQEAVEMK
101: HVGEGGGGGG SRVKYGWCAV TKTELKSILE YGFSQPSNDG SYGRGLYLSP DNALLECVKG SAAESEDGMR FLLLSRVILG KSEVVPRGST QSCPSSPEFD
201: SGVDNLSSPK KYIVWSTHMN THVLPEFLVC LKTPFNFNSP RRLRSPWMPF PLLIKALSKF LPPPQIVIIQ KHYRDQQNMR ISRSELIQRV RRITGDKLLV
301: HIIKAVGNKV QQQ

Best Arabidopsis Sequence Match ( AT5G62520.1 )
(BLAST)

001: MDYVRTQVEA VFDDSEQDGS TISESGSCDS SSDRSFADEL GLMELLEGDK AHDLIYRNCK SGLGDQCQIL SVLRNGFRNV GSRAKLKTFQ VFQEAVQMKH
101: GGDGGAKVKY GWCSVSKHEL KTIFEYGFSE PLRNDGSFGR GLYLSPDNSP LDCLKDSASE SEDGMRFLLL CRVLLGKSEI VPQGSTRSCP SSPEFDSGVD
201: DLVSTKKYIV WSTHMNTHVL PEFLVCIKAP FNLTRSPKRL RSPWMAFPVL IKALSKFLPP SQILVIQKHY KDQQNRRITR SELIQRVRSI TGDKLLVHII
301: KACGHKVQH

Arabidopsis Description

SRO5Probable inactive poly [ADP-ribose] polymerase SRO5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.