Factsheet for VIT_17s0000g08370.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0014g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62520.1	VIT_19s0014g00220.t01	AT1G53510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57070	Soybean	cytosol	41.57	43.73
VIT_01s0127g00680.t01	Wine grape	nucleus	41.28	43.69
KRH03292	Soybean	cytosol	41.57	42.56
CDY70596	Canola	cytosol	35.47	40.26
CDY61348	Canola	nucleus	36.34	40.19
GSMUA_Achr5P03800_001	Banana	cytosol	19.77	40.0
Bra010096.1-P	Field mustard	nucleus	36.34	39.94
CDY00302	Canola	nucleus	36.34	39.94
Bra029254.1-P	Field mustard	cytosol	35.17	39.93
KRH63531	Soybean	nucleus	37.79	39.39
AT5G62520.1	Thale cress	nucleus	34.88	38.84
PGSC0003DMT400063250	Potato	nucleus	41.86	38.3
Solyc03g114360.2.1	Tomato	nucleus	41.28	37.87
GSMUA_Achr4P27510_001	Banana	cytosol	29.07	34.72
CDY66230	Canola	extracellular, golgi	35.76	34.55
CDY30723	Canola	extracellular, golgi	35.76	34.55
AT3G47720.1	Thale cress	nucleus	31.69	34.49
VIT_02s0012g01920.t01	Wine grape	cytosol	27.03	17.45
VIT_02s0012g01930.t01	Wine grape	nucleus	29.36	16.21
VIT_18s0001g08290.t01	Wine grape	plastid	21.22	15.05

Protein Annotations

EntrezGene:100265712	wikigene:100265712	Gene3D:3.90.228.10	MapMan:35.1	EMBL:AM458081	ProteinID:CAN67883
ProteinID:CAN67883.1	ProteinID:CBI15032	ProteinID:CBI15032.3	UniProt:D7SHS2	EMBL:FN594950	GO:GO:0003674
GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	EntrezGene:LOC100265712	wikigene:LOC100265712
PFAM:PF12174	PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF6	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST
SUPFAM:SSF56399	UniParc:UPI0001BE0A65	ArrayExpress:VIT_17s0000g08370	EnsemblPlantsGene:VIT_17s0000g08370	EnsemblPlants:VIT_17s0000g08370.t01	unigene:Vvi.19747
unigene:Vvi.22811	RefSeq:XP_002282800	RefSeq:XP_002282800.1	RefSeq:XP_002282800.2	:	:

Description

No Description!

Coordinates

chr17:+:9558506..9562151

Molecular Weight (calculated)

38700.3 Da

IEP (calculated)

8.768

GRAVY (calculated)

-0.448

Length

344 amino acids

Sequence
(BLAST)

001: METMAVEPWD VMYHTANHGD EASVSDCESG TTHNEHIHGL VRLDEDEKLH RIIEKALVSG LGPLRQHTSV VDIHRNGYAS VISQARLQSF RIFGRAVEKK
101: CEGNANVKFG WYSASKDEIG RIISHGFSHS NGLYGCGVYL YPHHSSIESM KSCVVDEDGL RHLLLCRVIL GKMEVVHPGS QQYHPSSEDF DSGVDNLPAP
201: KKYIVWSTHM NTHILPEYVV TFRAPPCLKG FLNTQGSLKK PTSPWMPFTT LISVLSKFLP PQSVNLIAKH HRDHRENKIP RHELIRLVRQ IAGDKLLTVV
301: IKSHRAKQLN STNGSHQRKA QNGARNRMDS IQQPGSSIES IYLE

Best Arabidopsis Sequence Match ( AT1G23550.1 )
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Arabidopsis Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.