CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87097
CDX88160
CDY05377
CDY05474
CDY10771
CDY10772
CDY19813
CDY22597
CDY24724
CDY41739
CDY43007
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11020.1	CDY22597	AT1G32230.1	19548978
AT3G11020.1	CDY41739	AT1G32230.1	19548978
AT3G11020.1	CDY43007	AT1G32230.1	19548978
AT3G11020.1	CDY60257	AT1G32230.1	19548978
AT3G11020.1	CDY67026	AT1G32230.1	19548978
AT3G11020.1	CDY10771	AT2G31070.1	21245844
AT3G11020.1	CDY10772	AT2G31070.1	21245844
AT3G11020.1	CDY24724	AT2G31070.1	21245844
AT3G11020.1	CDX87097	AT5G25160.1	21245844
AT3G11020.1	CDX88160	AT5G25160.1	21245844
AT3G11020.1	CDY05377	AT5G25160.1	21245844
AT3G11020.1	CDY05474	AT5G25160.1	21245844
AT3G11020.1	CDY19813	AT5G25160.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034159.1-P	Field mustard	nucleus	91.44	92.07
CDY36289	Canola	nucleus	89.04	89.35
CDY00987	Canola	nucleus	71.58	67.2
CDY08557	Canola	nucleus	71.23	66.24
AT3G11020.1	Thale cress	nucleus	68.49	60.61
CDX73896	Canola	nucleus	69.18	52.88
CDX70151	Canola	nucleus	56.51	50.0
CDY04950	Canola	nucleus	55.14	49.69
CDX98843	Canola	nucleus	56.16	49.1
CDY52149	Canola	nucleus	54.11	48.17
CDY33815	Canola	nucleus	17.81	45.22
CDY00719	Canola	nucleus	30.82	37.97
CDX93190	Canola	nucleus	25.0	34.27
HORVU6Hr1G050500.2	Barley	nucleus	32.53	31.67
CDY71905	Canola	nucleus	26.37	31.56
HORVU6Hr1G050520.2	Barley	nucleus	25.34	31.22
CDY54455	Canola	nucleus	26.03	30.77
CDY39036	Canola	nucleus	20.55	30.3
CDY47519	Canola	nucleus	21.23	30.1
CDY20377	Canola	nucleus	20.21	29.8
CDY64211	Canola	nucleus, plastid	20.89	29.61
CDY52924	Canola	nucleus	33.56	29.17
CDX68128	Canola	nucleus	20.21	28.92
CDY70626	Canola	nucleus	20.21	28.92
KXG21735	Sorghum	nucleus	32.88	28.57
TraesCS1D01G223600.2	Wheat	nucleus	36.3	27.11
TraesCS1B01G235100.2	Wheat	nucleus	35.96	27.06
Zm00001d010048_P004	Maize	nucleus	33.9	26.98
CDY61527	Canola	nucleus	27.05	26.87
TraesCS1A01G221900.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	35.96	25.8
CDY06088	Canola	nucleus	23.63	25.56
CDX72012	Canola	nucleus	23.63	25.27
CDX70820	Canola	nucleus	23.63	24.64
CDY58117	Canola	nucleus	23.97	24.22
CDY02629	Canola	nucleus	23.63	23.96
HORVU1Hr1G060490.5	Barley	plasma membrane	36.99	23.89
CDX88955	Canola	nucleus	21.23	23.85
CDY52095	Canola	nucleus	21.58	23.68
CDX92610	Canola	nucleus	24.66	23.53
CDY25420	Canola	nucleus	24.32	21.65
CDY54991	Canola	nucleus	21.23	18.4
CDY52427	Canola	nucleus	19.86	17.96
CDY07614	Canola	nucleus	19.52	16.96
CDY33814	Canola	nucleus	3.77	12.64

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	GO:A0A078JJU1	UniProt:A0A078JJU1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDY67039	ProteinID:CDY67039	ProteinID:CDY67039.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00058681001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0004EEC8C9	SEG:seg	:	:	:	:

Description

BnaAnng23490DBnaAnng23490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJU1]

Coordinates

chrLK035698:+:2116..3231

Molecular Weight (calculated)

32679.8 Da

IEP (calculated)

4.515

GRAVY (calculated)

-0.806

Length

292 amino acids

Sequence
(BLAST)

001: MAVYEQTVTD TSSSKKRKSR ARADGTTVAD RLKKWKEYND IVNKGENKPR QKVPAKGSKK GCMKGKGGPE NTHCSFRGVR QRVWGKWVAE IREPNRVSRL
101: WLGTFPTAEE AASAYDEAAK VMYGSLARLN FPQQCVVGSE SFASTSSQSE VCSVEDKPVL VGDVHCESRP VSQISDNNTR MSSDLLDEFD EEYWGRVSKE
201: IEKPKEGEEE VLTVADYGWS NDMLSEQDLW DPNEVFDVDE LLGDIDECIM LKGTGPDEDQ NGINPGGYDS HVPLQLEPHD GHEFFDLSSQ DL

Best Arabidopsis Sequence Match ( AT3G11020.1 )
(BLAST)

001: MAVYEQTGTE QPKKRKSRAR AGGLTVADRL KKWKEYNEIV EASAVKEGEK PKRKVPAKGS KKGCMKGKGG PDNSHCSFRG VRQRIWGKWV AEIREPKIGT
101: RLWLGTFPTA EKAASAYDEA ATAMYGSLAR LNFPQSVGSE FTSTSSQSEV CTVENKAVVC GDVCVKHEDT DCESNPFSQI LDVREESCGT RPDSCTVGHQ
201: DMNSSLNYDL LLEFEQQYWG QVLQEKEKPK QEEEEIQQQQ QEQQQQQLQP DLLTVADYGW PWSNDIVNDQ TSWDPNECFD INELLGDLNE PGPHQSQDQN
301: HVNSGSYDLH PLHLEPHDGH EFNGLSSLDI

Arabidopsis Description

DREB2BDehydration-responsive element-binding protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O82133]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.